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AT3G21890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : B-box type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: response to UV-B, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT4G15248.1); Has 1422 Blast hits to 1146 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1410; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4EMeggNOG:ENOG411168WEMBL:AB028622EMBL:AB493627EMBL:AY086564EMBL:CP002686EnsemblPlants:AT3G21890
EnsemblPlants:AT3G21890.1entrez:821744GeneID:821744GO:GO:0003700GO:GO:0005622GO:GO:0006355GO:GO:0008270
GO:GO:0010224Gramene:AT3G21890.1hmmpanther:PTHR31717hmmpanther:PTHR31717:SF11HOGENOM:HOG000090727InterPro:IPR000315KEGG:ath:AT3G21890
OMA:RSLCTRPPfam:PF00643PhylomeDB:Q9LRM4Proteomes:UP000006548RefSeq:NP_188827.1SMART:SM00336STRING:3702.AT3G21890.1
TAIR:AT3G21890UniGene:At.37979UniProt:Q9LRM4
Coordinates (TAIR10) chr3:-:7709298..7709663
Molecular Weight (calculated) 13660.20 Da
IEP (calculated) 7.30
GRAVY (calculated) -0.32
Length 121 amino acids
Sequence (TAIR10)
(BLAST)
001: MCRGLNNEES RRSDGGGCRS LCTRPSVPVR CELCDGDASV FCEADSAFLC RKCDRWVHGA NFLAWRHVRR VLCTSCQKLT RRCLVGDHDF HVVLPSVTTV
101: GETTVENRSE QDNHEVPFVF L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)