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AT3G21810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 904 Blast hits to 850 proteins in 161 species: Archae - 9; Bacteria - 40; Metazoa - 431; Fungi - 54; Plants - 83; Viruses - 2; Other Eukaryotes - 285 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVXKeggNOG:ENOG4112ATJEMBL:AB025634EMBL:AY059899EMBL:AY128791EMBL:CP002686EnsemblPlants:AT3G21810
EnsemblPlants:AT3G21810.1entrez:821735Gene3D:4.10.1000.10GeneID:821735Genevisible:Q93XW7GO:GO:0003677GO:GO:0046872
Gramene:AT3G21810.1hmmpanther:PTHR38160hmmpanther:PTHR38160:SF1HOGENOM:HOG000107454InParanoid:Q93XW7InterPro:IPR000571iPTMnet:Q93XW7
KEGG:ath:AT3G21810ncoils:CoilOMA:ENRRFDEPaxDb:Q93XW7Pfam:PF00642Pfam:Q93XW7Pfscan:PS50103
PhylomeDB:Q93XW7PRIDE:Q93XW7PRO:PR:Q93XW7PROSITE:PS50103ProteinModelPortal:Q93XW7Proteomes:UP000006548RefSeq:NP_566691.1
SMR:Q93XW7SUPFAM:SSF90229TAIR:AT3G21810UniGene:At.43333UniGene:At.5858UniProt:Q93XW7
Coordinates (TAIR10) chr3:+:7684852..7688360
Molecular Weight (calculated) 50522.10 Da
IEP (calculated) 5.63
GRAVY (calculated) -1.27
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGSSMYKTK LCILFNKTGD CSRPNCTFAH GNAELRRPGE SSFTGRRHNM DSDLRDRRHN MDSDLRDRLG RQFSPERRPS LDRSGRRVQR FSGHDNSMPF
101: ENRRDKDYRE NRRFDERRDY AGGLKVGNRI EDRAEDGRNK FHGYNNVLEE QLKDVEMDVK MLTDDKLRLE ASVERKAHEV DILTSRIQEL ETQLDREKDE
201: CRRITSSSKK FVKEYNRFLR AQDDLKRSEA RLQKLGNQLS TYLAGSEGNN RDVGLDIVSD EETNGRNLRT ACDPHNELQN TSSLSRKKHY VDQYTTKEPV
301: EDGLIGRGEE EKVENEKKRP PCWNMLSSKS YSEEESGAWN DEDTINRSSS KEDNWKRRRF SIGTSATDKV ILSTSMAARE FDDVAESEEE NPEAANGSPL
401: ISLPPPPPFR DAHVQRDEDD VNGDVMEQKK AYDDDSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)