suba logo
AT3G21770.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, nucleus, plant-type cell wall, cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G05260.1); Has 4451 Blast hits to 4425 proteins in 278 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 123; Plants - 4268; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G21770-MONOMEREC:1.11.1.7eggNOG:ENOG410IFQReggNOG:ENOG410Y9MEEMBL:AB025634EMBL:AY072326EMBL:AY084816
EMBL:AY114567EMBL:CP002686EMBL:X98321EMBL:X98854EnsemblPlants:AT3G21770EnsemblPlants:AT3G21770.1entrez:821731
GeneID:821731Genevisible:Q9LSY7GO:GO:0004601GO:GO:0005576GO:GO:0005618GO:GO:0005634GO:GO:0005737
GO:GO:0006979GO:GO:0009505GO:GO:0009506GO:GO:0020037GO:GO:0042744GO:GO:0046872Gramene:AT3G21770.1
hmmpanther:PTHR31235HOGENOM:HOG000237556InterPro:IPR000823InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794
KEGG:00940+1.11.1.7KEGG:ath:AT3G21770KO:K00430OMA:HIQNHIHPaxDb:Q9LSY7PeroxiBase:123Pfam:PF00141
Pfam:Q9LSY7Pfscan:PS50873PhylomeDB:Q9LSY7PRIDE:Q9LSY7PRINTS:PR00458PRINTS:PR00461PRO:PR:Q9LSY7
PROSITE:PS00435PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:Q9LSY7Proteomes:UP000006548RefSeq:NP_188814.1scanprosite:PS00435
scanprosite:PS00436SMR:Q9LSY7STRING:3702.AT3G21770.1SUPFAM:SSF48113TAIR:AT3G21770TMHMM:TMhelixUniGene:At.25181
UniProt:Q9LSY7
Coordinates (TAIR10) chr3:+:7673345..7674661
Molecular Weight (calculated) 35790.20 Da
IEP (calculated) 10.27
GRAVY (calculated) -0.17
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTMTQLNIA VVVVVTVLIG MLRSSEAQLQ MNFYAKSCPN AEKIISDHIQ NHIHNGPSLA APLIRMHFHD CFVRGCDGSV LINSTSGNAE RDAPPNLTLR
101: GFGFVERIKA LLEKVCPKTV SCADIIALTA RDAVVATGGP SWSVPTGRRD GRISNKTEAT NNIPPPTSNF TTLQRLFKNQ GLNLKDLVLL SGAHTIGVSH
201: CSSMNTRLYN FSTTVKQDPS LDSQYAANLK ANKCKSLNDN STILEMDPGS SRSFDLSYYR LVLKRRGLFQ SDSALTTNSA TLKVINDLVN GSEKKFFKAF
301: AKSMEKMGRV KVKTGSAGVI RTRCSVAGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)