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AT3G21720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24130194 (2013): peroxisome
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : isocitrate lyase
Curator
Summary (TAIR10)
Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).
Computational
Description (TAIR10)
isocitrate lyase (ICL); FUNCTIONS IN: isocitrate lyase activity, catalytic activity; INVOLVED IN: carboxylic acid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, seed, leaf; CONTAINS InterPro DOMAIN/s: Isocitrate lyase/phosphorylmutase, conserved site (InterPro:IPR018523), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase (InterPro:IPR006254), Isocitrate lyase/phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G77060.1); Has 9953 Blast hits to 7473 proteins in 1388 species: Archae - 150; Bacteria - 5572; Metazoa - 28; Fungi - 504; Plants - 171; Viruses - 0; Other Eukaryotes - 3528 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2224eggNOG:KOG1260EMBL:AK226403EMBL:AK316978EnsemblPlants:AT3G21720EnsemblPlants:AT3G21720.1entrez:821726
ExpressionAtlas:Q0WWE9Gene3D:3.20.20.60GeneID:821726GO:GO:0004451GO:GO:0019752Gramene:AT3G21720.1gramene_pathway:4.1.3.1
gramene_pathway:GLYOXYLATE-BYPASShmmpanther:PTHR21631hmmpanther:PTHR21631:SF3InterPro:IPR006254InterPro:IPR015813InterPro:IPR018523KEGG:00630+4.1.3.1
KEGG:ath:AT3G21720KO:K01637OMA:VTEDQFHPfam:P28297Pfam:PF00463PhylomeDB:Q0WWE9PROSITE:PS00161
RefSeq:NP_188809.2scanprosite:PS00161SMR:Q0WWE9STRING:3702.AT3G21720.1SUPFAM:SSF51621TAIR:AT3G21720tair10-symbols:ICL
TIGRfam:TIGR01346TIGRFAMs:TIGR01346UniGene:At.38005unipathway:UPA00703UniProt:P28297UniProt:Q0WWE9
Coordinates (TAIR10) chr3:-:7652789..7655873
Molecular Weight (calculated) 64248.30 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.34
Length 576 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT
101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG
201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA
301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA
401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE
501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)