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AT3G21690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G61890.1); Has 11325 Blast hits to 11232 proteins in 2038 species: Archae - 269; Bacteria - 8227; Metazoa - 142; Fungi - 332; Plants - 1357; Viruses - 0; Other Eukaryotes - 998 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AB019232EMBL:AY099744EMBL:BT015408EMBL:CP002686EnsemblPlants:AT3G21690
EnsemblPlants:AT3G21690.1entrez:821723GeneID:821723Genevisible:Q9LVD9GO:GO:0005773GO:GO:0005774GO:GO:0015238
GO:GO:0015297GO:GO:0016021Gramene:AT3G21690.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF88HOGENOM:HOG000177025IntAct:Q9LVD9
InterPro:IPR002528KEGG:ath:AT3G21690KO:K03327ncoils:CoilOMA:LIWITIRPaxDb:Q9LVD9Pfam:PF01554
PhylomeDB:Q9LVD9PRIDE:Q8LPI3ProteinModelPortal:Q9LVD9Proteomes:UP000006548RefSeq:NP_188806.1SMR:Q9LVD9STRING:3702.AT3G21690.1
TAIR:AT3G21690TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.43957UniGene:At.67726UniProt:Q9LVD9
Coordinates (TAIR10) chr3:+:7638750..7641861
Molecular Weight (calculated) 54954.70 Da
IEP (calculated) 5.19
GRAVY (calculated) 0.69
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSPNDGVH QPLLHPQPSP SPPESTNGEL ETVLSDVETP LFLRLRKATI IESKLLFNLA APAVIVYMIN YLMSMSTQIF SGHLGNLELA AASLGNTGIQ
101: VFAYGLMLGM GSAVETLCGQ AYGGRKYEML GVYLQRSTVL LTLTGLLLTL IYVFSEPILL FLGESPAIAS AASLFVYGLI PQIFAYAANF PIQKFLQSQS
201: IVAPSAYIST ATLFVHLLLS WLAVYKLGMG LLGASLVLSL SWWIIVVAQF VYIVTSERCR ETWRGFSVQA FSGLWSFFKL SAASAVMLCL ETWYFQILVL
301: LAGLLENPEL ALDSLSICMT ISGWVFMISV GFNAAISVRV SNELGAGNPK SAAFSVIIVN IYSLITCVIL AIVILACRDV LSYAFTEGKE VSDAVSDLCP
401: LLAVTLVLNG IQPVLSGVAV GCGWQTFVAK VNVGCYYIIG IPLGALFGFY FNFGAKGIWT GMIGGTVIQT FILAWVTFRT DWTKEVEEAS KRLDKWSNKK
501: QEVVPE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)