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AT3G21670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.929
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30447334 (2019): plasma membrane
  • PMID:27122571 (2016): mitochondrion
  • PMID:25641898 (2015): plasma membrane
  • PMID:22182420 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G26690.1); Has 7861 Blast hits to 7524 proteins in 1448 species: Archae - 0; Bacteria - 4058; Metazoa - 633; Fungi - 459; Plants - 2170; Viruses - 0; Other Eukaryotes - 541 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:AB019232EMBL:AF372959
EMBL:AJ131464EMBL:AY084539EMBL:AY143946EMBL:CP002686
EnsemblPlants:AT3G21670EnsemblPlants:AT3G21670.1entrez:821721GeneID:821721
Genevisible:Q9LVE0GO:GO:0015293GO:GO:0016021GO:GO:0042128
Gramene:AT3G21670.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF154HOGENOM:HOG000237400
InParanoid:Q9LVE0InterPro:IPR000109InterPro:IPR020846iPTMnet:Q9LVE0
KEGG:ath:AT3G21670OMA:GTWIRNNPANTHER:PTHR11654PaxDb:Q9LVE0
Pfam:PF00854Pfam:Q9LVE0PhylomeDB:Q9LVE0PIR:T52585
PRIDE:Q9LVE0PRO:PR:Q9LVE0ProteinModelPortal:Q9LVE0Proteomes:UP000006548
RefSeq:NP_188804.1SMR:Q9LVE0STRING:3702.AT3G21670.1SUPFAM:SSF103473
TAIR:AT3G21670TMHMM:TMhelixUniGene:At.23165UniProt:Q9LVE0
Coordinates (TAIR10) chr3:-:7626942..7628954
Molecular Weight (calculated) 65249.50 Da
IEP (calculated) 9.41
GRAVY (calculated) 0.20
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MVHVSSSHGA KDGSEEAYDY RGNPPDKSKT GGWLGAGLIL GSELSERICV MGISMNLVTY LVGDLHISSA KSATIVTNFM GTLNLLGLLG GFLADAKLGR
101: YKMVAISASV TALGVLLLTV ATTISSMRPP ICDDFRRLHH QCIEANGHQL ALLYVALYTI ALGGGGIKSN VSGFGSDQFD TSDPKEEKQM IFFFNRFYFS
201: ISVGSLFAVI ALVYVQDNVG RGWGYGISAA TMVVAAIVLL CGTKRYRFKK PKGSPFTTIW RVGFLAWKKR KESYPAHPSL LNGYDNTTVP HTEMLKCLDK
301: AAISKNESSP SSKDFEEKDP WIVSTVTQVE EVKLVMKLVP IWATNILFWT IYSQMTTFTV EQATFMDRKL GSFTVPAGSY SAFLILTILL FTSLNERVFV
401: PLTRRLTKKP QGITSLQRIG VGLVFSMAAM AVAAVIENAR REAAVNNDKK ISAFWLVPQY FLVGAGEAFA YVGQLEFFIR EAPERMKSMS TGLFLSTISM
501: GFFVSSLLVS LVDRVTDKSW LRSNLNKARL NYFYWLLVVL GALNFLIFIV FAMKHQYKAD VITVVVTDDD SVEKEVTKKE SSEFELKDIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)