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AT3G21600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.611
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Senescence/dehydration-associated protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Senescence/dehydration-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT4G15450.1); Has 135 Blast hits to 135 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFVEeggNOG:ENOG410YG0VEMBL:AB019232EMBL:CP002686
EnsemblPlants:AT3G21600EnsemblPlants:AT3G21600.1entrez:821714ExpressionAtlas:Q9LVE6
GeneID:821714Gramene:AT3G21600.1hmmpanther:PTHR21068hmmpanther:PTHR21068:SF5
HOGENOM:HOG000239897InterPro:IPR009686KEGG:ath:AT3G21600OMA:LAMIVRI
Pfam:PF06911PhylomeDB:Q9LVE6Proteomes:UP000006548RefSeq:NP_188797.1
STRING:3702.AT3G21600.1TAIR:AT3G21600UniGene:At.38030UniProt:Q9LVE6
Coordinates (TAIR10) chr3:-:7606735..7608364
Molecular Weight (calculated) 40457.10 Da
IEP (calculated) 9.31
GRAVY (calculated) -0.33
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCFGPSKAS RTRNNEHDKI TRQNPSHQPQ TMRAEEVLLQ IPRCRVHLIG ESEAVELASG DFKLVKVSDN GVTLAMIVRI GHDLQWPVIR DEPVVKLDAR
101: DYLFTLPVKD GDPLSYGVTF SGDDRDVALV NSLKLLDQFL SENSCFSSTA SSKVNNGIDW QEFAPRIEDY NNVVAKAIAG GTGHIIRGIF SLSNAYSNQV
201: HKGGDIMITK AEESQRNGSY NNGNSSGNEK KNGINTHLQR VRKLSKATEN LSKTMLNGAG VVSGSVMVPM MKSKPGMAFF SMVPGEVLLA SLDALNKILD
301: ATEAAERQTL SATSRAATRM VSERFGDNAG EATGDVLATA GHAAGTAWNV LKIRKTFYPS SSLTSGIVKN APRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)