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AT3G21550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DUF679 domain membrane protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DUF679 domain membrane protein 2 (DMP2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: DUF679 domain membrane protein 1 (TAIR:AT3G21520.1); Has 265 Blast hits to 257 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 265; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWUPeggNOG:ENOG410YF1HEMBL:AB019232EMBL:AY052198
EMBL:AY060489EMBL:CP002686EnsemblPlants:AT3G21550EnsemblPlants:AT3G21550.1
entrez:821709GeneID:821709GO:GO:0005783GO:GO:0009705
GO:GO:0016021Gramene:AT3G21550.1hmmpanther:PTHR31621hmmpanther:PTHR31621:SF1
HOGENOM:HOG000237886InterPro:IPR007770KEGG:ath:AT3G21550OMA:CAFASFT
Pfam:PF05078PhylomeDB:Q9LVF1Proteomes:UP000006548RefSeq:NP_566687.1
STRING:3702.AT3G21550.1TAIR:AT3G21550tair10-symbols:AtDMP2tair10-symbols:DMP2
TMHMM:TMhelixUniGene:At.26439UniProt:Q9LVF1
Coordinates (TAIR10) chr3:-:7591708..7592262
Molecular Weight (calculated) 20167.50 Da
IEP (calculated) 8.37
GRAVY (calculated) 0.38
Length 184 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKTFKAIRD RTYSGVGDLI KLLPTGTVFL FQFLNPVLTN NGHCLLINKY LTGVLIVICA FSCCFTCFTD SYRTRDGYVH YGVATVKGLW PDSSSVDLSS
101: KRLRVGDFVH AFFSLIVFSV ISLLDANTVN CFYPGFGSAG KIFLMVLPPV IGVISGAVFT VFPSRRHGIG NPSDHSEDDA SEMK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)