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AT3G21420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.961
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: senescence-related gene 1 (TAIR:AT1G17020.1); Has 8953 Blast hits to 8890 proteins in 1011 species: Archae - 0; Bacteria - 1172; Metazoa - 113; Fungi - 1056; Plants - 5016; Viruses - 0; Other Eukaryotes - 1596 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G21420-MONOMEReggNOG:COG3491eggNOG:KOG0143EMBL:AK227427
EMBL:AP001305EMBL:AY084795EMBL:BT005988EMBL:CP002686
EnsemblPlants:AT3G21420EnsemblPlants:AT3G21420.1entrez:821696Gene3D:2.60.120.330
GeneID:821696GO:GO:0016491GO:GO:0046872Gramene:AT3G21420.1
gramene_pathway:1.14.11.9gramene_pathway:PWY-5152gramene_pathway:PWY1F-823gramene_pathway:PWY1F-FLAVSYN
hmmpanther:PTHR10209hmmpanther:PTHR10209:SF169HOGENOM:HOG000276735InterPro:IPR005123
InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT3G21420OMA:EYENELV
Pfam:PF03171Pfam:PF14226Pfscan:PS51471PhylomeDB:Q9LIF4
PROSITE:PS51471Proteomes:UP000006548RefSeq:NP_566685.1SMR:Q9LIF4
SUPFAM:SSF51197TAIR:AT3G21420UniGene:At.38063UniProt:Q9LIF4
Coordinates (TAIR10) chr3:+:7541579..7543221
Molecular Weight (calculated) 41690.80 Da
IEP (calculated) 5.48
GRAVY (calculated) -0.42
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPLPISSIR VGKIDDVQEL IKSKPNKVPE RFIREEYERG VVVSSLKTHH LHHQIPVIDL SKLSKPDNDD FFFEILKLSQ ACEDWGFFQV INHGIEVEVV
101: EDIEEVASEF FDMPLEEKKK YPMEPGTVQG YGQAFIFSED QKLDWCNMFA LGVHPPQIRN PKLWPSKPAR FSESLEGYSK EIRELCKRLL KYIAISLGLK
201: EERFEEMFGE AVQAVRMNYY PPCSSPDLVL GLSPHSDGSA LTVLQQSKNS CVGLQILKDN TWVPVKPLPN ALVINIGDTI EVLSNGKYKS VEHRAVTNRE
301: KERLTIVTFY APNYEVEIEP MSELVDDETN PCKYRSYNHG DYSYHYVSNK LQGKKSLDFA KILN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)