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AT3G21350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA polymerase transcriptional regulation mediator-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MED6; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med6, metazoa/plant (InterPro:IPR016820), Mediator complex, subunit Med6 (InterPro:IPR007018); Has 344 Blast hits to 344 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 139; Plants - 37; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G21350EnsemblPlants:AT3G21350.1entrez:821689hmmpanther:PTHR13104Pfam:PF04934tair10-symbols:MED6
Coordinates (TAIR10) chr3:+:7517106..7518587
Molecular Weight (calculated) 28801.10 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.51
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSLLSAAT ADTFNGNAAD QIPPPLQPPG TDMTGISFRD QLWINSYPLD RNYIFDYFAL SPFYDTTCNN EILRRRSIHP LDLSHLSKMT GLEYMLTDAT
101: EPNLFVFRKQ KRDGPEKVTP MLTYYILDGS IYQAPQLCSV FAARVSRTIY NISKAFTDAA SKLETIRQVD TENQNEPAES KPASETVDLK EMKRVDVILT
201: SLYRKLAPPP PPPPFPEGYV SQEALGEKEE LGTQGGESQP PQVDPIIDQG PAKRMKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)