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AT3G21300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA methyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA methyltransferase family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), 23S rRNA methyltransferase/RumA (InterPro:IPR001566), (Uracil-5)-methyltransferase (InterPro:IPR010280), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G28450.2); Has 10349 Blast hits to 9632 proteins in 2576 species: Archae - 226; Bacteria - 8529; Metazoa - 196; Fungi - 218; Plants - 136; Viruses - 7; Other Eukaryotes - 1037 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2066-MONOMEReggNOG:COG2265eggNOG:KOG2187EMBL:AB023045EMBL:CP002686EnsemblPlants:AT3G21300EnsemblPlants:AT3G21300.1
entrez:821684Gene3D:2.40.50.140Gene3D:3.40.50.150GeneID:821684GO:GO:0003723GO:GO:0006396GO:GO:0008173
Gramene:AT3G21300.1hmmpanther:PTHR11061hmmpanther:PTHR11061:SF30InterPro:IPR001566InterPro:IPR002792InterPro:IPR010280InterPro:IPR012340
InterPro:IPR029063InterPro:IPR030391KEGG:ath:AT3G21300OMA:ADFFPQTPfam:PF05958Pfscan:PS50926Pfscan:PS51687
PhylomeDB:Q9LU28PROSITE:PS01231PROSITE:PS50926PROSITE:PS51687Proteomes:UP000006548RefSeq:NP_188767.2scanprosite:PS01231
SMR:Q9LU28STRING:3702.AT3G21300.1SUPFAM:SSF50249SUPFAM:SSF53335TAIR:AT3G21300TIGRfam:TIGR00479TIGRFAMs:TIGR00479
UniGene:At.38085UniProt:Q9LU28
Coordinates (TAIR10) chr3:-:7493654..7496257
Molecular Weight (calculated) 61735.40 Da
IEP (calculated) 7.84
GRAVY (calculated) -0.26
Length 554 amino acids
Sequence (TAIR10)
(BLAST)
001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)