AT3G21290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : dentin sialophosphoprotein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Occludin/RNA polymerase II elongation factor, ELL domain (InterPro:IPR010844); Has 17175 Blast hits to 8691 proteins in 788 species: Archae - 88; Bacteria - 6651; Metazoa - 4182; Fungi - 1520; Plants - 456; Viruses - 109; Other Eukaryotes - 4169 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7482318..7488676 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 130758.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.47 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.08 | ||||||||||||||||||||||||
| Length | 1192 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFKGSSKRGG RGGSGGGGSG PSRNRNSFPP PTNRHPSPIG RMSSGGGGGG SAAPRQRSNS TSVKAAASTT VSSRTVEETF NLVPRESSSA FGMIIRLSPD 0101: LVDEIKRVEA QGGAAKIKFD AFPNNSTENI INVGGKEFKF TWSGEKGELC DIYEEHQSGE DGNGLLIEAG CAWRKLNVLR TLDESTTSHM KMRSVEAEQR 0201: TKSRKAIVLD PGNPSVTKQL AHAEGSPWRM SNKQKKEPPP KKRKVDPPPV PVGGPKPSFR PGASTPTMKN RLSASPGPSP SNQYNTPPYG IGNMAKTHAA 0301: NENVTPVQTK GRVNMIEKEP SAWKNNVLRD TSGREAINVN KEIDLQSLLV DILKEAPMSL KALEKAVGDK VPNPAKKIEP ILKRIANFQA PRYFLKPEAE 0401: LESYKKHSPD SGSSPEHQQL LPVTECSRDQ LPVPGRNNTE KFSLCEQNGE GSLDCLPVHL VEQLSTQENV DIEHHSPGIF HEEKRSENRE AQARSSSDSD 0501: SDSDNSDSGS DSKSAAGSDS GSSSDSEASS NSKDGSDEDV DIMSDGDREP LLTTQSLEQD AIDLPGHGSS AVEIEGHNSD AVDIDGHDSD AVDIDGHGSD 0601: TVDVEGNSSD EGHGSDADRK KNSDNNWKME TTTGTSPTAN GEVGISGQEH FTSGHDNLRE RQNFIGQLFD DTENTTKNNF KNDKRDISER LGKDQNQKAL 0701: DFEHYSQKSA HEKNRKSQSC NQLSAVSKDS QHSELKYDAE LRNASASQTI DPLRGLLKSS IEKSNRHGKS NKHSDALGNV RKSDKGDHFP LEMLSSRSGK 0801: AFRDNQRDDV HLKNKFPRNK KDGESAIRPS LPTETSDRKP DELDGSDKDP KNVSGLSIGS SPLDSQRTYL AKLPKGNGPV LQKQVSELEL GELPEPLGED 0901: TALKPIEEKT SFRQSNLKPS TSEKLGIDSD KRRSKKSDSK KAAPPHTVNG SNEHVVEDSE RSQKWALQSH GQNLTGTDTE ISSQNKNLED AAYKSRQKDS 1001: RARVGNSVEG YGETNKKTPV VKHGSKRAST SRSSRESKRH SSVSNSINGH KDATSIPGGS VVREKQMTSF GEEDSSYLKY EKASPELKGP ISDHLQYKAY 1101: MQEYNDKYDS YHSINKILES HRNDFQKLGQ DLGFAKGRDV ERYNKIVEQI KESYCKYGER HKRLKKVFVV LHEELKHLKQ RMRDYASSHG KD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)