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AT3G21215.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G42240.1); Has 5454 Blast hits to 2765 proteins in 341 species: Archae - 4; Bacteria - 269; Metazoa - 1333; Fungi - 651; Plants - 2326; Viruses - 357; Other Eukaryotes - 514 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISATeggNOG:ENOG410XTAEEMBL:AF361632EMBL:AK118175EMBL:AK226266EMBL:AK317062EMBL:AY143892
EMBL:CP002686EnsemblPlants:AT3G21215EnsemblPlants:AT3G21215.1entrez:821675Gene3D:3.30.70.330GeneID:821675GO:GO:0000166
GO:GO:0003676Gramene:AT3G21215.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF393HOGENOM:HOG000242657IntAct:Q9ASW4InterPro:IPR000504
InterPro:IPR012677KEGG:ath:AT3G21215OMA:QNMKDNPPfam:PF00076Pfscan:PS50102PhylomeDB:Q9ASW4PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_683582.2SMART:SM00360SMR:Q9ASW4STRING:3702.AT3G21215.1SUPFAM:SSF54928TAIR:AT3G21215
UniGene:At.27825UniProt:Q9ASW4
Coordinates (TAIR10) chr3:-:7442873..7445231
Molecular Weight (calculated) 36981.90 Da
IEP (calculated) 7.82
GRAVY (calculated) -0.50
Length 339 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYSKN PYGKRKEGGG YSFFPSPSAN GAQGALTYQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)