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AT3G21175.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ZIM-like 1
Curator
Summary (TAIR10)
member of a novel family of plant-specific GATA-type transcription factors.
Computational
Description (TAIR10)
ZIM-like 1 (ZML1); FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), CCT domain (InterPro:IPR010402), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: ZIM-LIKE 2 (TAIR:AT1G51600.2); Has 2137 Blast hits to 2132 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 496; Plants - 1587; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
BioGrid:7002eggNOG:COG5641eggNOG:KOG1601EMBL:AB023045EMBL:AB119060EMBL:AK118169EMBL:AY042817
EMBL:AY064628EMBL:AY085109EMBL:CP002686EnsemblPlants:AT3G21175EnsemblPlants:AT3G21175.1entrez:821670ExpressionAtlas:Q8GXL7
Gene3D:3.30.50.10GeneID:821670Genevisible:Q8GXL7GO:GO:0000977GO:GO:0001085GO:GO:0001228GO:GO:0003682
GO:GO:0005634GO:GO:0005667GO:GO:0006366GO:GO:0008270GO:GO:0030154GO:GO:0045944hmmpanther:PTHR10071
hmmpanther:PTHR10071:SF167HOGENOM:HOG000238783InParanoid:Q8GXL7IntAct:Q8GXL7InterPro:IPR000679InterPro:IPR010399InterPro:IPR010402
InterPro:IPR013088OMA:NGRMHIGPaxDb:Q8GXL7Pfam:PF00320Pfam:PF06200Pfam:PF06203Pfam:Q8GXL7
Pfscan:PS50114Pfscan:PS51017Pfscan:PS51320PhylomeDB:Q8GXL7PRIDE:Q8GXL7PRO:PR:Q8GXL7PROSITE:PS00344
PROSITE:PS50114PROSITE:PS51017PROSITE:PS51320ProteinModelPortal:Q8GXL7Proteomes:UP000006548RefSeq:NP_566676.1RefSeq:NP_850618.1
scanprosite:PS00344SMART:SM00401SMART:SM00979SMR:Q8GXL7STRING:3702.AT3G21175.1SUPFAM:SSF57716TAIR:AT3G21175
tair10-symbols:GATA24tair10-symbols:TIFY2Btair10-symbols:ZML1UniGene:At.20286UniProt:Q8GXL7
Coordinates (TAIR10) chr3:+:7422832..7424598
Molecular Weight (calculated) 32884.60 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.85
Length 297 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRVLG LSGTPQRLSV PQRLASLLRF REKRKGRNFD KTIRYTVRKE VALRMQRKKG QFTSAKSSND DSGSTGSDWG
201: SNQSWAVEGT ETQKPEVLCR HCGTSEKSTP MMRRGPDGPR TLCNACGLMW ANKGTLRDLS KVPPPQTPQH LSLNKNEDAN LEADQMMEVT GDISNTQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)