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AT3G21170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.904
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G21130.1); Has 1537 Blast hits to 1490 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1535; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:AB023045EMBL:CP002686EnsemblPlants:AT3G21170EnsemblPlants:AT3G21170.1
entrez:821669GeneID:821669Genevisible:Q9LU43Gramene:AT3G21170.1
hmmpanther:PTHR32133hmmpanther:PTHR32133:SF82HOGENOM:HOG000112505InParanoid:Q9LU43
InterPro:IPR001810InterPro:IPR006527InterPro:IPR017451KEGG:ath:AT3G21170
PaxDb:Q9LU43Pfam:PF00646Pfam:PF07734Pfam:Q9LU43
Pfscan:PS50181PhylomeDB:Q9LU43PRO:PR:Q9LU43PROSITE:PS50181
ProteinModelPortal:Q9LU43Proteomes:UP000006548RefSeq:NP_188754.1SMART:SM00256
SMR:Q9LU43SUPFAM:SSF81383TAIR:AT3G21170TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.53416UniProt:Q9LU43
Coordinates (TAIR10) chr3:+:7419976..7421160
Molecular Weight (calculated) 45303.10 Da
IEP (calculated) 8.98
GRAVY (calculated) -0.31
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MTFNDLPEDL VVEILSRVPA VFLARLRSTS KRWNTLIKDG KLSKKHSSNA PRHSMALVLI DHKVYSVRSN LRGIHNSVAP YVNITCHFSL KEHLSNNYST
101: EVDIGHVFHC DGLLLCTTKD YRLVVWNPLS GETRWIQPRF CYKKDDCYAL GRSSCNKYKI LRQGRLINPS EERYVYNIVG EDLVINNSQE RYEYEIYDFN
201: SNSWRSIGVI TGLFNPNITS GVSVNGITYW FDISEQFLLS FDFSTERFGS ESLPEGDSHL ALSVTRQGKR LCMLSTNYTY VTGTNVNLWI ATKTSENTRA
301: MSWSKFPILR GGVGLRYRCH FREGVSFFAY QVKEKIVVVS CHRPNRHSKD IIHIVENDKF IELDHHGAKP THELSPTPRL LIYVPSLVQI QHGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)