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AT3G21080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC transporter-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC transporter-related; BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G21090.1); Has 247 Blast hits to 244 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 247; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AK117839EMBL:AP000604EMBL:BT006226EMBL:CP002686
EnsemblPlants:AT3G21080EnsemblPlants:AT3G21080.1entrez:821660GeneID:821660
GO:GO:0016021Gramene:AT3G21080.1hmmpanther:PTHR19241hmmpanther:PTHR19241:SF186
KEGG:ath:AT3G21080PhylomeDB:Q9LJC4Proteomes:UP000006548RefSeq:NP_188745.1
STRING:3702.AT3G21080.1TAIR:AT3G21080TMHMM:TMhelixUniGene:At.46821
UniProt:Q9LJC4
Coordinates (TAIR10) chr3:-:7388490..7389811
Molecular Weight (calculated) 28971.70 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.10
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MATHDFDFTD PYGNKDRKSL YSNQDNYFNN WSSLTQSEEV VEELSIQQTK YDHRSLPSLR TAEAEAAEWN ELERWGNQEL QHNGTRIRGI ITYKSGNLPG
101: VLSFSVIEIL MMVVASFVPN FLTGLFTGAG LIGIIMTSSG FSRLLPDLPK IFCRFSISYT ISYMIFGSWA IKLGHNNNFL GPLSPDEPKM TGEEMNMNEF
201: GVKVTHSGWW GFPEIVIAIL VCTWLLFFVA QKLKERARPA SRVIQAKVYF NVQLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)