AT3G20920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : translocation protein-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
translocation protein-related; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocation protein Sec62 (InterPro:IPR004728); Has 251 Blast hits to 251 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 63; Plants - 45; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7328763..7330698 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41946.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||
| Length | 365 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKPVGAEKK RVKRSSGSAS TSVRDSGSDS QPRKQAVKKD SFQLFAEKVR DHKGLESRWA VMEQARVEYF RGKDFVSFMK NNPDFKDILE EDKDLDTDDI 101: ANVLLGKNLL VRCDRVTKTL RPGKKKLSTW PAHLEIFRDD QSFSENDAFF AWTFEKRHPL WQTLLSFFWP VLTLAICLFP VYPHRCKLIV LYSCAGILLM 201: ILSLLFVRAV AFGAMWILLG KRVWFFPNIL AEEATLKELF RFWPKKDEEE PPKWTSRLFY TVVAIVVVML LRRHAPDEAA RARYQRRMSN IIDDVLEWSP 301: KLALSGLMEN QQPVNITDAA NNSSDSAGGP DQTEEVDLDE TQGEDLDETQ GKEEAEGWTD SDLKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)