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AT3G20810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.361
cytosol 0.327
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G19840.2); Has 1946 Blast hits to 1923 proteins in 341 species: Archae - 0; Bacteria - 483; Metazoa - 767; Fungi - 226; Plants - 240; Viruses - 3; Other Eukaryotes - 227 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1644-MONOMERBioCyc:ARA:GQT-2192-MONOMEREC:1.14.11.-eggNOG:ENOG410XQDReggNOG:KOG2132EMBL:AB025629EMBL:AY084468
EMBL:AY091769EMBL:AY125538EMBL:CP002686EnsemblPlants:AT3G20810EnsemblPlants:AT3G20810.1EnsemblPlants:AT3G20810.2entrez:821629
ExpressionAtlas:Q8RWR1GeneID:821629Genevisible:Q8RWR1GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006355
GO:GO:0007623GO:GO:0010452GO:GO:0042752GO:GO:0046872GO:GO:0046975GO:GO:0051213GO:GO:0070544
hmmpanther:PTHR12461hmmpanther:PTHR12461:SF38HOGENOM:HOG000264453InParanoid:Q8RWR1IntAct:Q8RWR1InterPro:IPR003347iPTMnet:Q8RWR1
OMA:YSMACLHPaxDb:Q8RWR1Pfam:PF13621Pfscan:PS51184PhylomeDB:Q8RWR1PRIDE:Q8RWR1PRO:PR:Q8RWR1
PROSITE:PS51184ProteinModelPortal:Q8RWR1Proteomes:UP000006548RefSeq:NP_566667.1RefSeq:NP_850617.1SMART:SM00558SMR:Q8RWR1
STRING:3702.AT3G20810.2SUPFAM:SSF51197TAIR:AT3G20810tair10-symbols:JMJD5UniGene:At.38175UniProt:B9DGS1UniProt:Q9LT40
Coordinates (TAIR10) chr3:+:7275814..7278144
Molecular Weight (calculated) 46819.70 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.22
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGATTASSG DHNNLRLPTP TLDAESQTLL QSISAEGGYA YARMAVLAVA GDQSAAEAAR DMAWEQLHSG PWHSVLPVWR DAYSMACLHV AKIHFAAGEF
101: GEALGALDMG LIMGGMLLRK DLHDSVLLVS SEARKMTKSL EEASGDFKGE RLVPEVPVDV NEVLKILPCR SLTCKRVEKR SGLSLEGFLR DYYLPGTPVV
201: ITNSMAHWPA RTKWNHLDYL NAVAGNRTVP VEVGKNYLCS DWKQELVTFS KFLERMRTNK SSPMEPTYLA QHPLFDQINE LRDDICIPDY CFVGGGELQS
301: LNAWFGPAGT VTPLHHDPHH NILAQVVGKK YIRLYPSFLQ DELYPYSETM LCNSSQVDLD NIDETEFPKA MELEFMDCIL EEGEMLYIPP KWWHYVRSLT
401: MSLSVSFWWS NEAESSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)