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AT3G20800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.776
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cell differentiation, Rcd1-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cell differentiation, Rcd1-like protein; CONTAINS InterPro DOMAIN/s: Cell differentiation, Rcd1-like (InterPro:IPR007216); BEST Arabidopsis thaliana protein match is: Cell differentiation, Rcd1-like protein (TAIR:AT5G12980.1); Has 491 Blast hits to 488 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 135; Plants - 110; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
Protein Annotations
DNASU:821628eggNOG:COG5209eggNOG:KOG3036EMBL:AY091082
EMBL:AY122953EMBL:CP002686EnsemblPlants:AT3G20800EnsemblPlants:AT3G20800.1
entrez:821628GeneID:821628GO:GO:0006402GO:GO:0030014
Gramene:AT3G20800.1hmmpanther:PTHR12262InterPro:IPR007216InterPro:IPR016024
KEGG:ath:AT3G20800KO:K12606OMA:VASNRICPANTHER:PTHR12262
Pfam:PF04078PhylomeDB:Q8RWV5Proteomes:UP000006548RefSeq:NP_188716.1
SMR:Q8RWV5STRING:3702.AT3G20800.1SUPFAM:SSF48371TAIR:AT3G20800
UniGene:At.48685UniGene:At.66456UniProt:Q8RWV5
Coordinates (TAIR10) chr3:-:7271412..7273897
Molecular Weight (calculated) 34713.20 Da
IEP (calculated) 7.41
GRAVY (calculated) 0.09
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MANLPSSLSM GTPFGGPSTS AQNPTGAPAN KDRNLASAEQ LVLDLSNPEL RENALLELSK KRELFQDLAP LLWNSFGTIA ALLQEIVSIY SVLAPPNLTP
101: AQSNRVCNSL ALLQCVASHS DTRMLFLKAH IPLYLYPFLN TTSKSRPFEY LRLTSLGVIG ALVKVDDTEV ISFLLSTEII PLCLRTMEMG SELSKTVATF
201: IVQKILLDDV GMDYICTTAE RFFAVGRVLG NMVQSLVEQP SPRLLKHIIR CYLRLSDNPR ACAALASCLP DSLRDGSFSN CLREDPTARR WLQQLVHNVG
301: VGRVPTHQGG GFEHML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)