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AT3G20720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.578
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 184 Blast hits to 181 proteins in 66 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
EMBL:CP002686EnsemblPlants:AT3G20720EnsemblPlants:AT3G20720.1entrez:821620ExpressionAtlas:F4JES7GeneID:821620Gramene:AT3G20720.1
hmmpanther:PTHR22774hmmpanther:PTHR22774:SF11InterPro:IPR026728InterPro:IPR026854ncoils:CoilPANTHER:PTHR22774Pfam:PF12624
PRIDE:F4JES7Proteomes:UP000006548RefSeq:NP_188708.4TAIR:AT3G20720UniGene:At.20884UniGene:At.47002UniProt:F4JES7
Coordinates (TAIR10) chr3:+:7240098..7246754
Molecular Weight (calculated) 122854.00 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.13
Length 1122 amino acids
Sequence (TAIR10)
(BLAST)
0001: MESILARALE YTLKYWLKSF TRDQFKLQGR TAQLSNLDIN GEAIHASMGL PPALSVTTAK VGKLEIMLPY VSNVQTEPIV VQIDKLDLVL EENPDADVTK
0101: GPSSSQSPTA SAKSNGYGFA DKIADGMTLQ VKVVNLLLET GGGANREGGA AWAAPLASIT IRNLVLYTTN ESWKVVNLKE ARDFSTNTGF IYLFKKLEWE
0201: ALSIDLLPHP DMFTEANLAR SEEANLRDED GAKRITVQRT ALNSPLGLEV QLHIPEAVCP ALSEPGLRAL LRFLTGMYLC LNRGDVDPKS QQSAEAAGRS
0301: LVSVLVDHVF LCIKDAEFQL ELLMQSLLFS RACVSDGESA NYLTKILIGG LFLRDAFSRS PCALIQPSMK AAAEDLAIPD FAKNFCPLIY PLDSGPWQIV
0401: QDVPLISLHS LQVKPSPKPP HFFSKTVIQC QPLMVHLQEE ACLRISSFLA DGIVVNPGDV LPDNSVNSLL FTLKELDVSV PLDMSNLQDS AIEEDLSVKK
0501: SFVGARLHIE NLSFAESPTL KVRLLNLEKD PACFCLWPGQ PIDASQKKWT AGASHFSLAL ETSPNSTQLQ SPRGPEMGLW NCVEGKDVSI EVAMVSADGK
0601: PLITIPPPGG IVRIGVACEQ YISRASVEQL FFVLDLYSYF GKVSEKISIV KESKRQNTVS LTGGLLEKVP SDTAVKLALK DLQLKFLESS FTSTQDMPLV
0701: QFLGKDLSVK VTHRTLGGAI AVSSNIYWEN IEVDCVDTDV EHEHENSWNG HLVSCNGSTP LRRVFWVVNG RHDEHSGSTL TPFLDISITH VIPLSEKDME
0801: CHSVSIVAYG TPGNWNGDGF PHLGRPDDID VSVELRDWLF ALEGREGVGT RILNNEDIGR EERCWHTNFR TFRVIAKSTP KNVDSNGTEN QCDAHKYPVD
0901: SIIVSVEGLQ TVKPQMQKGT DSCNGLSTNG VHENGQMHGG VNIEANIVAS EDKSVHDDLL NWVAESLKFS VKQPVEAVVT KDELQHLTFL CKSEIDAMGR
1001: IVAGVLRVLK LEESIGQATL NQLSNLGSEG FDKMFSPKAS RAGSPKSSPF AASLDSMREI SLRANLESTI SSIEEASMEL EAKCSALVSD LNDSESSAKH
1101: ANELKQKLES LQSLMAKLRT QI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)