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AT3G20690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT3G20700.1); Has 1424 Blast hits to 1373 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1424; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AP002034EMBL:CP002686EMBL:DQ446679EnsemblPlants:AT3G20690EnsemblPlants:AT3G20690.1entrez:821616GeneID:821616
Genevisible:Q1PEN8hmmpanther:PTHR32133hmmpanther:PTHR32133:SF120HOGENOM:HOG000112505InParanoid:Q1PEN8InterPro:IPR001810InterPro:IPR006527
InterPro:IPR017451KEGG:ath:AT3G20690OMA:ASEMEIWPaxDb:Q1PEN8Pfam:PF00646Pfam:PF07734Pfam:Q1PEN8
Pfscan:PS50181PhylomeDB:Q1PEN8PRO:PR:Q1PEN8PROSITE:PS50181ProteinModelPortal:Q1PEN8Proteomes:UP000006548RefSeq:NP_188705.1
SMART:SM00256SUPFAM:SSF81383TAIR:AT3G20690TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.65109UniProt:Q1PEN8
Coordinates (TAIR10) chr3:-:7231570..7232682
Molecular Weight (calculated) 43125.30 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.21
Length 370 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMSDLPHDL VEEILSRLPL ISLKAMRSTC KTWNVLSKHR SFANKHIGNV TASGKRDLIM IKDCKVYSIG VNLHGIQNNN NIIDLSIKNK GILHLENLDL
101: IFKEIFNVFH CNGLLLLYGS ITDDSIRLVV CNPYWGKREW VKRINNFASF DKLAFGYDKS CGCHKILRVF DSYPNRLEIY NLRSNSRMVS SFPLKWDIAF
201: MQDGVSLKGN TYWYAKDRRS EDCYLICFDF TRERFGPRLP LPQPFIDEFL GSLYVVREEK LAVLVKRWRG GKSEIDIWVT NKIEPDEVSW SKFLKVDNTP
301: RFFLTEGYLI YDEEKVVVFF NKEETEGLKS TVHIAYIVGE NGYFRRADLR EPLYQPLCRL VCSYVPSSVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)