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AT3G20580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : COBRA-like protein 10 precursor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
COBRA-like protein 10 precursor (COBL10); CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBRA-like protein 11 precursor (TAIR:AT4G27110.1); Has 377 Blast hits to 368 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 377; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGX1eggNOG:ENOG410ZHV6EMBL:AK118605EMBL:AP000410EMBL:BT005952EMBL:CP002686EnsemblPlants:AT3G20580
EnsemblPlants:AT3G20580.1entrez:821605GeneID:821605Genevisible:Q9LJU0GO:GO:0005886GO:GO:0010215GO:GO:0016049
GO:GO:0031225Gramene:AT3G20580.1hmmpanther:PTHR31052hmmpanther:PTHR31052:SF2HOGENOM:HOG000217914InParanoid:Q9LJU0InterPro:IPR006918
KEGG:ath:AT3G20580OMA:VASWQVAPaxDb:Q9LJU0Pfam:PF04833Pfam:Q9LJU0PhylomeDB:Q9LJU0PRIDE:Q9LJU0
PRO:PR:Q9LJU0ProDom:PD140986Proteomes:UP000006548RefSeq:NP_188694.2STRING:3702.AT3G20580.1TAIR:AT3G20580tair10-symbols:COBL10
TMHMM:TMhelixUniGene:At.38215UniProt:Q9LJU0
Coordinates (TAIR10) chr3:-:7188063..7190416
Molecular Weight (calculated) 74673.60 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.36
Length 672 amino acids
Sequence (TAIR10)
(BLAST)
001: MRAIDVKTGM KIPWDVRYSL SLFIFLSSIL FLSNGQDYGM PGEDGGGGAE PPPEMAHCNG IFMSYNFGSR EREYPHVKNV TAQSWAFKST AMIVNAGREE
101: LKGWQMFIGF RHKELIVSAT GATPMDGDYP LDASNGTTFV GSPNMDLKTS IETAGDFTQI SANIEITGTL FGVSKAVTPM PRTIKLTNDG WECPAAKRKG
201: GSMHVCCKRN PKIKNKIGLK TKFAPRRYGD LNIVYDVLQS FDSNYLAQVT IDNDNPLGRL DRWNLTFEWM RGEFINTMRG AYTHKKDPSE CLYSKAGQYY
301: KDLDFSQVMN CQRKPAISDL PPEKKEDNMT GKLPFCCKNG TLLPPIMDPS KSRSMFQLQV FKLPPDLNRT ALYPPQHWKI DGVLNPQYKC GPPVRVDPSQ
401: FPDPSGLLAV TYAISSWQVV CNITKPKAQA SRCCVSFSAF YNNSAVPCNT CACGCNDIDT DTCNANSNPL LLPPDALLVP FDNRTLKAKA WAKQNHMPVP
501: KKLPCPDNCG VSINWHVSTD YKNGWTARLT VFNWRDFAFE DWFVAIDMGK AGPGYENVYS FNGTRVPPSN RTVIFQGLPG MNYLVGQVNG TNPLRDPPVP
601: GKQQSVISFT KKNIKGLNIP EGDGFPTKLF FNGEECALPK HFPKKSSGHR RGISVSMSFV FATIAAFALM MD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)