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AT3G20550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SMAD/FHA domain-containing protein
Curator
Summary (TAIR10)
Encodes a nuclear localized FHA (forhkead) domain containing protein.Mutant plants have shortened roots, delayed flowering time, altered floral organ number, defective floral organs and reduced fertility.Ddl mutants also show reduced levels of pri-miRNAs as well as mature miRNAs suggesting involvement in biogenesis of miRNAs. DDL does not affect transcription of miRNAs directly but may act through other proteins such as DCL.
Computational
Description (TAIR10)
DAWDLE (DDL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell proliferation, production of miRNAs involved in gene silencing by miRNA; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24410.1); Has 20960 Blast hits to 11868 proteins in 728 species: Archae - 18; Bacteria - 1126; Metazoa - 10847; Fungi - 2610; Plants - 1671; Viruses - 61; Other Eukaryotes - 4627 (source: NCBI BLink).
Protein Annotations
BioGrid:6933DIP:DIP-46412NeggNOG:ENOG4111F4HeggNOG:KOG1882EMBL:AP000410EMBL:AY062626EMBL:BT000005
EMBL:CP002686EnsemblPlants:AT3G20550EnsemblPlants:AT3G20550.1entrez:821601Gene3D:2.60.200.20GeneID:821601Genevisible:Q8W4D8
GO:GO:0003723GO:GO:0005634GO:GO:0005829GO:GO:0008283GO:GO:0009507GO:GO:0035196GO:GO:0048638
Gramene:AT3G20550.1hmmpanther:PTHR23308HOGENOM:HOG000264922IntAct:Q8W4D8InterPro:IPR000253InterPro:IPR008984iPTMnet:Q8W4D8
KEGG:ath:AT3G20550KO:K13108OMA:PWRIFVFPaxDb:Q8W4D8PDB:3VPYPDBsum:3VPYPfam:PF00498
Pfam:Q8W4D8Pfscan:PS50006PhylomeDB:Q8W4D8PRIDE:Q8W4D8PRO:PR:Q8W4D8PROSITE:PS50006ProteinModelPortal:Q8W4D8
Proteomes:UP000006548RefSeq:NP_188691.1SMART:SM00240SMR:Q8W4D8STRING:3702.AT3G20550.1SUPFAM:SSF49879TAIR:AT3G20550
tair10-symbols:DDLUniGene:At.27430UniProt:Q8W4D8
Coordinates (TAIR10) chr3:-:7174695..7177600
Molecular Weight (calculated) 36954.80 Da
IEP (calculated) 9.89
GRAVY (calculated) -1.59
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPSSRSPSP RTKRLRRARG EKEIGRSRER EDDGREREKR NSRERDRDIG RDRDRERKGE GERDREVGDK RRRSGREDTE KRRRTRTDDE RYSRGRHERS
101: TSPSDRSHRS SRRSPERAIA SRHDEGSNAR GGSEEPNVEE DSVARMRAVE EALAAKKKEE PSFELSGKLA EETNRYRGIT LLFNEPPEAR KPSERWRLYV
201: FKDGEPLNEP LCLHRQSCYL FGRERRIADI PTDHPSCSKQ HAVIQYREME KEKPDGMMGK QVKPYIMDLG STNKTYINES PIEPQRYYEL FEKDTIKFGN
301: SSREYVLLHE NSAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)