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AT3G20510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.826
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transmembrane proteins 14C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane proteins 14C; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: Transmembrane proteins 14C (TAIR:AT1G50740.1); Has 449 Blast hits to 449 proteins in 111 species: Archae - 0; Bacteria - 35; Metazoa - 208; Fungi - 10; Plants - 185; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4112205eggNOG:KOG4267EMBL:AK176567EMBL:AK176851EMBL:AP000410EMBL:BT010505EMBL:CP002686
EnsemblPlants:AT3G20510EnsemblPlants:AT3G20510.1entrez:821597GeneID:821597Genevisible:Q9LJU6GO:GO:0005634GO:GO:0005737
GO:GO:0012505GO:GO:0016021Gramene:AT3G20510.1hmmpanther:PTHR12668hmmpanther:PTHR12668:SF0HOGENOM:HOG000211932IntAct:Q9LJU6
InterPro:IPR005349KEGG:ath:AT3G20510OMA:CAAILTWPANTHER:PTHR12668PaxDb:Q9LJU6Pfam:PF03647Pfam:Q9LJU6
PhylomeDB:Q9LJU6PRO:PR:Q9LJU6ProteinModelPortal:Q9LJU6Proteomes:UP000006548RefSeq:NP_188687.1SMR:Q9LJU6STRING:3702.AT3G20510.1
TAIR:AT3G20510TMHMM:TMhelixUniGene:At.43873UniProt:Q9LJU6
Coordinates (TAIR10) chr3:+:7160884..7161991
Molecular Weight (calculated) 12511.90 Da
IEP (calculated) 10.16
GRAVY (calculated) 0.72
Length 119 amino acids
Sequence (TAIR10)
(BLAST)
001: MHDFCFTIPY GMLLIGGGFI GYMKKGSITS FAGGAGTGLL LILAGYISLK AFEKKKNSTI AMVLQTVIAA ALTLVMGQRY LLTGKIMPAG LVAGISALMT
101: CFYVYKIATG GNKFPAKAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)