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AT3G20390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : endoribonuclease L-PSP family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
endoribonuclease L-PSP family protein; FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: response to cadmium ion; LOCATED IN: thylakoid, mitochondrion, chloroplast, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease L-PSP (InterPro:IPR006175), YjgF-like protein, conserved site (InterPro:IPR019897), Endoribonuclease L-PSP/chorismate mutase-like (InterPro:IPR013813), YjgF-like protein (InterPro:IPR006056); Has 9982 Blast hits to 9763 proteins in 2269 species: Archae - 153; Bacteria - 7551; Metazoa - 243; Fungi - 414; Plants - 68; Viruses - 0; Other Eukaryotes - 1553 (source: NCBI BLink).
Protein Annotations
BioGrid:6916EC:3.5.99.10eggNOG:COG0251eggNOG:KOG2317EMBL:AB024036EMBL:AF375446EMBL:AK227774
EMBL:AK229768EMBL:AY060547EMBL:AY086036EMBL:CP002686EnsemblPlants:AT3G20390EnsemblPlants:AT3G20390.1entrez:821584
Gene3D:3.30.1330.40GeneID:821584Genevisible:Q94JQ4GO:GO:0005739GO:GO:0005773GO:GO:0009082GO:GO:0009097
GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009636GO:GO:0009941GO:GO:0016787
GO:GO:0019239GO:GO:0046686Gramene:AT3G20390.1hmmpanther:PTHR11803hmmpanther:PTHR11803:SF13HOGENOM:HOG000267215InParanoid:Q94JQ4
IntAct:Q94JQ4InterPro:IPR006056InterPro:IPR006175InterPro:IPR013813InterPro:IPR019897iPTMnet:Q94JQ4KEGG:ath:AT3G20390
OMA:DEMNETYPANTHER:PTHR11803PaxDb:Q94JQ4Pfam:PF01042Pfam:Q94JQ4PhylomeDB:Q94JQ4PRIDE:Q94JQ4
PRO:PR:Q94JQ4PROSITE:PS01094ProteinModelPortal:Q94JQ4Proteomes:UP000006548RefSeq:NP_188674.1scanprosite:PS01094SMR:Q94JQ4
STRING:3702.AT3G20390.1SUPFAM:SSF55298TAIR:AT3G20390TIGRfam:TIGR00004TIGRFAMs:TIGR00004UniGene:At.71273UniGene:At.8179
UniProt:Q94JQ4
Coordinates (TAIR10) chr3:-:7110227..7111695
Molecular Weight (calculated) 19816.90 Da
IEP (calculated) 8.67
GRAVY (calculated) 0.22
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MTWSVFRSIN TPTLDLSTAL RSTRTPLVAA GVGCATFAGV SLFRMSSRSP PFASLSVSAS SVKKEVVSTE KAPAALGPYS QAIKANNLVF LSGVLGLIPE
101: TGKFVSESVE DQTEQVLKNM GEILKASGAD YSSVVKTTIM LADLADFKTV NEIYAKYFPA PSPARSTYQV AALPLNAKIE IECIATL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)