AT3G20370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.841 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT3G20360.1); Has 795 Blast hits to 651 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 671; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7105481..7107079 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43451.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.54 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||
| Length | 379 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASHYRNTSA IAYLLLCLFI TSATAHSFIR QITDDLKTNL QQEVGAEPIQ NLDVGHYLQE NKEISSRDYK VSASNAVKGL RDRPPSSYSL KMESFNTLLK 101: STYTEKYVSR PFSVGGYNWT LVVFPNGNKK DSGSGYLSLY VAIDNSTLGQ QEIYADLRFY IFNKNERKYF TIQDTDVWKF SVFKTMWGFS QVLPIDTFKD 201: PTKGYLYDGD HCEFGVDVTM PSLYEKSELF SVTENFLNPR FTWTIRGFST LLKNSYLSEV FSIGGRSWNI QINPSGLGTG EGKALSMYLG LNVNEIFRPY 301: EKIYVRAKLR ALNQLNLSNI ERELDIWYNG PGYGEYSWGF PEFIYFPYLT DSSKGFVKND VLMVQVEMEA ISSTKYFPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)