suba logo
AT3G20330.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PYRIMIDINE B
Curator
Summary (TAIR10)
encodes aspartate carbamoyltransferase catalyzing the second step in the de novo pyrimidine ribonucleotide biosynthesis
Computational
Description (TAIR10)
PYRIMIDINE B (PYRB); FUNCTIONS IN: amino acid binding, protein binding, aspartate carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, pyrimidine ribonucleotide biosynthetic process, cellular amino acid metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding (InterPro:IPR006132), Aspartate/ornithine carbamoyltransferase (InterPro:IPR006130), Aspartate carbamoyltransferase, eukaryotic (InterPro:IPR002082), Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain (InterPro:IPR006131); BEST Arabidopsis thaliana protein match is: ornithine carbamoyltransferase (TAIR:AT1G75330.1); Has 16843 Blast hits to 16841 proteins in 2894 species: Archae - 534; Bacteria - 10902; Metazoa - 218; Fungi - 284; Plants - 116; Viruses - 6; Other Eukaryotes - 4783 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G20330-MONOMERBioCyc:MetaCyc:AT3G20330-MONOMERBioGrid:6909EC:2.1.3.2eggNOG:COG0540eggNOG:ENOG410IUMUEMBL:AB024036
EMBL:AK175118EMBL:AY050381EMBL:AY090338EMBL:CP002686EMBL:X71843EnsemblPlants:AT3G20330EnsemblPlants:AT3G20330.1
entrez:821577Gene3D:3.40.50.1370GeneID:821577Genevisible:P49077GO:GO:0004070GO:GO:0005829GO:GO:0006207
GO:GO:0006520GO:GO:0009507GO:GO:0009570GO:GO:0016036GO:GO:0016597GO:GO:0044205Gramene:AT3G20330.1
gramene_pathway:2.1.3.2gramene_pathway:PWY-5686gramene_plant_reactome:1119263gramene_plant_reactome:1119444gramene_plant_reactome:6874620gramene_plant_reactome:6877155HAMAP:MF_00001
hmmpanther:PTHR11405hmmpanther:PTHR11405:SF16HOGENOM:HOG000022685InParanoid:P49077IntAct:P49077InterPro:IPR002082InterPro:IPR006130
InterPro:IPR006131InterPro:IPR006132KEGG:00240+2.1.3.2KEGG:00250+2.1.3.2KEGG:ath:AT3G20330KO:K00609OMA:KQSFYGV
PaxDb:P49077Pfam:P49077Pfam:PF00185Pfam:PF02729PhylomeDB:P49077PIR:S46441PRIDE:P49077
PRINTS:PR00100PRINTS:PR00101PRO:PR:P49077PROSITE:PS00097ProteinModelPortal:P49077Proteomes:UP000006548RefSeq:NP_188668.1
scanprosite:PS00097SMR:P49077STRING:3702.AT3G20330.1SUPFAM:SSF53671SwissPalm:P49077TAIR:AT3G20330tair10-symbols:PYRB
TIGRfam:TIGR00670TIGRFAMs:TIGR00670UniGene:At.20992UniPathway:UPA00070UniProt:P49077
Coordinates (TAIR10) chr3:-:7090354..7091904
Molecular Weight (calculated) 43169.10 Da
IEP (calculated) 6.54
GRAVY (calculated) -0.14
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIASSLTSA TLCGASVFPK ALACSSEFPI NLPSPFESSK ICLTSFPASR DLKKNATLNL TRNVGPVRCH AMQAGTRELK KFELSDVIEG KQFDREMLSA
101: IFDVAREMEK IEKSSSQSEI LKGYLMATLF YEPSTRTRLS FESAMKRLGG EVLTTENARE FSSAAKGETL EDTIRTVEGY SDIIVMRHFE SGAARKAAAT
201: ANIPVINAGD GPGEHPTQAL LDVYTIQSEI GKLDGISVAL VGDLANGRTV RSLAYLLAKF KDVKIYFVSP EIVKMKDDIK DYLTSSGVEW EESSDLMEVA
301: SKCDVVYQTR IQRERFGERL DLYEAARGKY IVDKDLLGVM QKKAIIMHPL PRLDEITADV DADPRAAYFR QAKNGLFIRM ALLKLLLVGW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)