AT3G20300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3537) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3537); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT1G50630.1); Has 143 Blast hits to 143 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7079832..7081809 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51328.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||
| Length | 452 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADIDIGTAA TTGGNEGRGG TRERLINREN KFTRSVSHAQ DELHSFRKYL RWMCVDQSSP WTAVLSWSMF VVFTLVVPAT SHFMLACSDC DSHHSRPYDS 101: VVQLSLSSFA ALSFLCLSRF VSKYGLRRFL FFDKLWDESE TVRLGYTNQL NRSLKILSYF VSPCFLAMSS YKIWWYASGA SQIPFLGNVI LSDTVACLME 201: LCSWLYRTTV IFLVCVLFRL ICHLQILRLQ DFAQVFQMDS DVGSILSEHL RIRRHLRIIS HRYRTFILLS LILVTGSQFY SLLITTKAYA ELNIYRAGEL 301: ALCSMTLVTA LLILLRSASK ITHKAQAVTC LAAKWHVCAT IESFETVDGE TPRLVDRASG HGYYPTDDDN GESDSEDYGD EEDDFDNNNL IPAYAYSTIS 401: FQKRQALVNY FENNRSGITV FGFTLDRSTL HTIFGIEMSL VLWLLGKTIG IS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)