suba logo
AT3G20260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1666)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT1G73850.1); Has 288 Blast hits to 284 proteins in 72 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 36; Plants - 99; Viruses - 14; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVSWeggNOG:ENOG410YB2CEMBL:AK221495EMBL:AY136396
EMBL:BT002120EMBL:CP002686EnsemblPlants:AT3G20260EnsemblPlants:AT3G20260.1
entrez:821570GeneID:821570GO:GO:0003735GO:GO:0005840
GO:GO:0006412Gramene:AT3G20260.1hmmpanther:PTHR10759hmmpanther:PTHR10759:SF4
HOGENOM:HOG000006212IntAct:Q8L795InterPro:IPR008195InterPro:IPR012870
KEGG:ath:AT3G20260OMA:FRKAHKPPANTHER:PTHR10759Pfam:PF07891
PhylomeDB:Q8L795Proteomes:UP000006548RefSeq:NP_188661.2STRING:3702.AT3G20260.1
TAIR:AT3G20260UniGene:At.23889UniProt:Q8L795
Coordinates (TAIR10) chr3:-:7064190..7065751
Molecular Weight (calculated) 50510.10 Da
IEP (calculated) 5.46
GRAVY (calculated) -0.71
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFLKVRKFR KSRKPNLEKE KEDKILAQQE QARSENTEAG VIDSGKGDEI EDDDDDFITN EVKRRLKELR RNSFMVLIPE EEEEEEEESY LDEDDDDGED
101: KCSSEWRDVV AEGLQWWGGF DAVYEKYCER MLFFDRLSSQ QLKETGIGIA PSPSTPSPRS ASKKLSSPFR CLSLKKFDVP EEDIEHLQPT EVDDPYQDLE
201: TAYVAQLCLT WEALHCQYTQ LSHLISCQPE TPTCYNHTAQ LFQQFLVLLQ RYIENEPFEQ GSRSELYARA RNAMPKLLQA PKIQGSDKKE MEKDTGFMVL
301: ADDLIKVIES SILTFNVFLK MDKKKPNGGI HLFGNHNNNH VNSTTPLLLV QSSIDKKRVK AKELSKKTKG LRKKSWPQTW EGVQLLFAAI DIKLATRVLR
401: MSKISKEQLL WCEEKMKKLN FSAGKLQRHP SPILFPC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)