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AT3G20250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pumilio 5
Curator
Summary (TAIR10)
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational
Description (TAIR10)
pumilio 5 (PUM5); FUNCTIONS IN: RNA binding, binding; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 6 (TAIR:AT4G25880.1); Has 4771 Blast hits to 2450 proteins in 259 species: Archae - 0; Bacteria - 10; Metazoa - 1074; Fungi - 1429; Plants - 1087; Viruses - 0; Other Eukaryotes - 1171 (source: NCBI BLink).
Protein Annotations
BioGrid:6901eggNOG:COG5099eggNOG:KOG1488EMBL:AK228410EMBL:AP000383EMBL:BX824276EMBL:CP002686
EnsemblPlants:AT3G20250EnsemblPlants:AT3G20250.1entrez:821569Gene3D:1.25.10.10GeneID:821569Genevisible:Q9LJX4GO:GO:0003727
GO:GO:0003729GO:GO:0005773GO:GO:0005829GO:GO:0006970GO:GO:0009651GO:GO:0009819GO:GO:0051607
GO:GO:0061158hmmpanther:PTHR12537hmmpanther:PTHR12537:SF74HOGENOM:HOG000238460InParanoid:Q9LJX4InterPro:IPR001313InterPro:IPR011989
InterPro:IPR016024InterPro:IPR033133iPTMnet:Q9LJX4KEGG:ath:AT3G20250OMA:LQSPRHMPaxDb:Q9LJX4Pfam:PF00806
Pfam:Q9LJX4Pfscan:PS50302Pfscan:PS50303PhylomeDB:Q9LJX4PRIDE:Q9LJX4PRO:PR:Q9LJX4PROSITE:PS50302
PROSITE:PS50303ProteinModelPortal:Q9LJX4Proteomes:UP000006548RefSeq:NP_188660.3SMART:SM00025SMR:Q9LJX4STRING:3702.AT3G20250.1
SUPFAM:SSF48371TAIR:AT3G20250tair10-symbols:APUM5tair10-symbols:PUM5UniGene:At.38266UniProt:Q9LJX4
Coordinates (TAIR10) chr3:-:7059098..7062660
Molecular Weight (calculated) 107001.00 Da
IEP (calculated) 5.84
GRAVY (calculated) -0.61
Length 961 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTTQSAMRM VEGDHIKNWQ ASSDSGIFGS LDMAVEDLGF LMKRNRLDSG DQTGKFPSRS ESAPPSMEGS FAALRNLLKQ QEGSSSEVLS RAIENYDSEE
101: EIRSDPAYVA YYLSNINLNP RLPPPLISRE NQHLLRHFGD NNQSPTTSWD NMGIRSSLHS SRTALSTHRE EPEDEASSGE QQSYASLAGR RKSIADMIQE
201: DFPLTLSSVF KRPHSAGNRP IAQDIHAISS DTSSEHARRL PESDINSVNL LRETDSLSSD AIASEDPFTT DLASQSFTNA QTERLNARQA SHEDNNLSVF
301: GASPPSSVAS RMRRNQEDQQ SQGRRMPPQY TPSSYQVQAS SPQQMSYPRI GGTQDMMQSL PKIATGEVHS TFQSPHGLAP PPMYTSTAAY MTSLSPFYHQ
401: NFQSSGMFVP QYNYGGYPPA SGIVPQYMSG YPSHEATVPM PYDISSTSSG YNNPRLLPGV SSSGQNIPSL VDPFQLQYFQ QAQVDAYAPP FQSSTDSFGQ
501: KDQQAVGYMA NHEPLNSPLS PGYGLQSPRH MGNYFAVPPG VRVMPQYPGS PLASPVMPSS PVGGMMSHFG RRSETRYHQQ GPSRNTGIYP GGWQGNRGGA
601: SSIVDDLKRH SFLDELKSPN ARKLELSDIA GRVVEFSVDQ HGSRFIQQKL EHCSDEEKAS VFSEVLPQAS KLMTDVFGNY VIQKFIEHGT PAQREELVKQ
701: LAGQMVSLSL QMYGCRVIQK ALEVIDVDQK TELIRELDGN VLKCVRDQNG NHVIQKCIES MPAGRIGFVI AAFRGQVATL STHPYGCRVI QRILEHCSDD
801: EETHCIIDEI LESAFALAHD QYGNYVTQHV LERGKPDERR QIIEKLTGNV VQMSQHKYAS NVVEKCLEHA DSTEREFLIE EIMGKSEEDN HLLAMMKDQF
901: ANYVVQKVLE ISKDQQREIL VQRMKIHLQS LRKYTYGKHI VARFEQLFGE ESEVSEEGTE G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)