AT3G20250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pumilio 5 (PUM5); FUNCTIONS IN: RNA binding, binding; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 6 (TAIR:AT4G25880.1); Has 4771 Blast hits to 2450 proteins in 259 species: Archae - 0; Bacteria - 10; Metazoa - 1074; Fungi - 1429; Plants - 1087; Viruses - 0; Other Eukaryotes - 1171 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7059098..7062660 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107001.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.84 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 961 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTTQSAMRM VEGDHIKNWQ ASSDSGIFGS LDMAVEDLGF LMKRNRLDSG DQTGKFPSRS ESAPPSMEGS FAALRNLLKQ QEGSSSEVLS RAIENYDSEE 101: EIRSDPAYVA YYLSNINLNP RLPPPLISRE NQHLLRHFGD NNQSPTTSWD NMGIRSSLHS SRTALSTHRE EPEDEASSGE QQSYASLAGR RKSIADMIQE 201: DFPLTLSSVF KRPHSAGNRP IAQDIHAISS DTSSEHARRL PESDINSVNL LRETDSLSSD AIASEDPFTT DLASQSFTNA QTERLNARQA SHEDNNLSVF 301: GASPPSSVAS RMRRNQEDQQ SQGRRMPPQY TPSSYQVQAS SPQQMSYPRI GGTQDMMQSL PKIATGEVHS TFQSPHGLAP PPMYTSTAAY MTSLSPFYHQ 401: NFQSSGMFVP QYNYGGYPPA SGIVPQYMSG YPSHEATVPM PYDISSTSSG YNNPRLLPGV SSSGQNIPSL VDPFQLQYFQ QAQVDAYAPP FQSSTDSFGQ 501: KDQQAVGYMA NHEPLNSPLS PGYGLQSPRH MGNYFAVPPG VRVMPQYPGS PLASPVMPSS PVGGMMSHFG RRSETRYHQQ GPSRNTGIYP GGWQGNRGGA 601: SSIVDDLKRH SFLDELKSPN ARKLELSDIA GRVVEFSVDQ HGSRFIQQKL EHCSDEEKAS VFSEVLPQAS KLMTDVFGNY VIQKFIEHGT PAQREELVKQ 701: LAGQMVSLSL QMYGCRVIQK ALEVIDVDQK TELIRELDGN VLKCVRDQNG NHVIQKCIES MPAGRIGFVI AAFRGQVATL STHPYGCRVI QRILEHCSDD 801: EETHCIIDEI LESAFALAHD QYGNYVTQHV LERGKPDERR QIIEKLTGNV VQMSQHKYAS NVVEKCLEHA DSTEREFLIE EIMGKSEEDN HLLAMMKDQF 901: ANYVVQKVLE ISKDQQREIL VQRMKIHLQS LRKYTYGKHI VARFEQLFGE ESEVSEEGTE G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)