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AT3G20220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.990
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SAUR-like auxin-responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: delta vacuolar processing enzyme (TAIR:AT3G20210.2); Has 1227 Blast hits to 1218 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1226; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J352eggNOG:ENOG410YUUHEMBL:AK118282EMBL:AP000383EMBL:BT005139EMBL:CP002686EnsemblPlants:AT3G20220
EnsemblPlants:AT3G20220.1entrez:821566GeneID:821566GO:GO:0009733Gramene:AT3G20220.1hmmpanther:PTHR31929hmmpanther:PTHR31929:SF7
HOGENOM:HOG000238628InterPro:IPR003676KEGG:ath:AT3G20220KO:K14488Pfam:PF02519PhylomeDB:Q9LJX7Proteomes:UP000006548
RefSeq:NP_188657.1TAIR:AT3G20220UniGene:At.26916UniGene:At.38271UniProt:Q9LJX7
Coordinates (TAIR10) chr3:+:7055060..7055416
Molecular Weight (calculated) 13868.50 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.75
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MISLSFIVRL ANQENRRNRR YETNIKDRLV SGELSDGSRP ARDQNGVPRG HLAVYVGREE RQRFVIPTKY LQYPEFRSLM DEVADEFGYD HEGGIHIPCE
101: ESVFEEILIR YMSCDKKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)