AT3G20190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G50610.1); Has 87494 Blast hits to 62015 proteins in 2065 species: Archae - 68; Bacteria - 4014; Metazoa - 18186; Fungi - 3311; Plants - 53872; Viruses - 182; Other Eukaryotes - 7861 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7044997..7047212 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76106.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 679 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTWETPVML ASNTASTKKL AFITTFLIIV LCPVTMVMSQ PQADVLPLPA SDADCLLRFK DTLVNASFIS SWDPSISPCK RNSENWFGVL CVTGNVWGLQ 101: LEGMGLTGKL DLEPLAAIKN LRTLSFMNNK FNGSMPSVKN FGALKSLYLS NNRFTGEIPA DAFDGMHHLK KLLLANNAFR GSIPSSLAYL PMLLELRLNG 201: NQFHGEIPYF KQKDLKLASF ENNDLEGPIP ESLSNMDPVS FSGNKNLCGP PLSPCSSDSG SSPDLPSSPT EKNKNQSFFI IAIVLIVIGI ILMIISLVVC 301: ILHTRRRKSL SAYPSAGQDR TEKYNYDQST DKDKAADSVT SYTSRRGAVP DQNKLLFLQD DIQRFDLQDL LRASAEVLGS GSFGSSYKTG INSGQMLVVK 401: RYKHMNNVGR DEFHEHMRRL GRLKHPNLLP IVAYYYRREE KLLIAEFMPN RSLASHLHAN HSVDQPGLDW PTRLKIIQGV AKGLGYLFNE LTTLTIPHGH 501: LKSSNVVLDE SFEPLLTDYA LRPVMNSEQS HNLMISYKSP EYSLKGHLTK KTDVWCLGVL ILELLTGRFP ENYLSQGYDA NMSLVTWVSN MVKEKKTGDV 601: FDKEMTGKKN CKAEMLNLLK IGLSCCEEDE ERRMEMRDAV EKIERLKEGE FDNDFASTTH NVFASRLIDD DDFGFAMNR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)