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AT3G20190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.744
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G50610.1); Has 87494 Blast hits to 62015 proteins in 2065 species: Archae - 68; Bacteria - 4014; Metazoa - 18186; Fungi - 3311; Plants - 53872; Viruses - 182; Other Eukaryotes - 7861 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G20190-MONOMEREC:2.7.11.1eggNOG:COG0515eggNOG:ENOG410IHM4EMBL:AP000383EMBL:BT002912EMBL:BT046196
EMBL:CP002686EMBL:FJ708724EnsemblPlants:AT3G20190EnsemblPlants:AT3G20190.1entrez:821563Gene3D:3.80.10.10GeneID:821563
Genevisible:Q9LJY0GO:GO:0004672GO:GO:0005524GO:GO:0016021GO:GO:0080092Gramene:AT3G20190.1hmmpanther:PTHR27008
hmmpanther:PTHR27008:SF12HOGENOM:HOG000116554InterPro:IPR000719InterPro:IPR001245InterPro:IPR001611InterPro:IPR011009InterPro:IPR013210
InterPro:IPR032675iPTMnet:Q9LJY0KEGG:ath:AT3G20190ncoils:CoilOMA:EMTGKKNPaxDb:Q9LJY0Pfam:PF07714
Pfam:PF08263Pfam:PF13855Pfam:Q9LJY0Pfscan:PS50011PhylomeDB:Q9LJY0PRIDE:Q9LJY0PRO:PR:Q9LJY0
PROSITE:PS50011ProteinModelPortal:Q9LJY0Proteomes:UP000006548RefSeq:NP_188654.2SMR:Q9LJY0STRING:3702.AT3G20190.1SUPFAM:SSF52058
SUPFAM:SSF56112TAIR:AT3G20190TMHMM:TMhelixUniGene:At.38280UniProt:Q9LJY0
Coordinates (TAIR10) chr3:+:7044997..7047212
Molecular Weight (calculated) 76106.70 Da
IEP (calculated) 7.22
GRAVY (calculated) -0.25
Length 679 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTWETPVML ASNTASTKKL AFITTFLIIV LCPVTMVMSQ PQADVLPLPA SDADCLLRFK DTLVNASFIS SWDPSISPCK RNSENWFGVL CVTGNVWGLQ
101: LEGMGLTGKL DLEPLAAIKN LRTLSFMNNK FNGSMPSVKN FGALKSLYLS NNRFTGEIPA DAFDGMHHLK KLLLANNAFR GSIPSSLAYL PMLLELRLNG
201: NQFHGEIPYF KQKDLKLASF ENNDLEGPIP ESLSNMDPVS FSGNKNLCGP PLSPCSSDSG SSPDLPSSPT EKNKNQSFFI IAIVLIVIGI ILMIISLVVC
301: ILHTRRRKSL SAYPSAGQDR TEKYNYDQST DKDKAADSVT SYTSRRGAVP DQNKLLFLQD DIQRFDLQDL LRASAEVLGS GSFGSSYKTG INSGQMLVVK
401: RYKHMNNVGR DEFHEHMRRL GRLKHPNLLP IVAYYYRREE KLLIAEFMPN RSLASHLHAN HSVDQPGLDW PTRLKIIQGV AKGLGYLFNE LTTLTIPHGH
501: LKSSNVVLDE SFEPLLTDYA LRPVMNSEQS HNLMISYKSP EYSLKGHLTK KTDVWCLGVL ILELLTGRFP ENYLSQGYDA NMSLVTWVSN MVKEKKTGDV
601: FDKEMTGKKN CKAEMLNLLK IGLSCCEEDE ERRMEMRDAV EKIERLKEGE FDNDFASTTH NVFASRLIDD DDFGFAMNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)