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AT3G19970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF829, transmembrane 53 (InterPro:IPR008547); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G18245.1); Has 401 Blast hits to 400 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 77; Plants - 116; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111184eggNOG:KOG2521EMBL:AP002050EMBL:AY039875EMBL:BT006339EMBL:CP002686EnsemblPlants:AT3G19970
EnsemblPlants:AT3G19970.1entrez:821535ESTHER:arath-q9lhe8Gene3D:3.40.50.1820GeneID:821535Gramene:AT3G19970.1hmmpanther:PTHR12265
hmmpanther:PTHR12265:SF0HOGENOM:HOG000070471InterPro:IPR008547InterPro:IPR029058KEGG:ath:AT3G19970MEROPS:S09.A57OMA:VRACDFV
PANTHER:PTHR12265Pfam:PF05705PhylomeDB:Q9LHE8Proteomes:UP000006548RefSeq:NP_566652.1STRING:3702.AT3G19970.1SUPFAM:SSF53474
TAIR:AT3G19970UniGene:At.5939UniProt:Q9LHE8
Coordinates (TAIR10) chr3:+:6959644..6961367
Molecular Weight (calculated) 47098.10 Da
IEP (calculated) 7.80
GRAVY (calculated) 0.02
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSLSGIIQR PLVAAAAVIT ASVSADVSER FSSLRSLVRG SESEQIAPSV SGLVQEERSL WVSQVSASKL ADLSFVSRIC VPVPNVDLLA SNPSCSLATS
101: VTSLSALRSV YQSAELAKAS KPVAFTIGAS LVVPDISYRW HLPEPSAVDM SGSSSCVSEK NRTVVVLLGW LGSKQKHLKK YADWYTSKGY HVITFTLPMN
201: EIMSYQVGGK AEKNIESLVN HLADWLDEEQ KKNLVFHTFS NTGWLTYGAI LEKFQKQDSS LMGRVKGCIV DSAPVAAADP TVWASGFSAA FLKKSSVATK
301: GSASSSYESN GINISQPKPA ATETALLLVL EKFFAVILNL PKVNRRLADV LDTLSTAQPS CPQLYIYSSA DRVIPVEQVE SFIVEQRKAG HEVRACNFIS
401: SPHVDHFRSN PELYTAELNH FMNNFVLSCC HHSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)