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AT3G19910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G63530.2); Has 15086 Blast hits to 12507 proteins in 429 species: Archae - 8; Bacteria - 555; Metazoa - 4333; Fungi - 1497; Plants - 5032; Viruses - 175; Other Eukaryotes - 3486 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AB025631EMBL:AY045590EMBL:AY045984EMBL:AY079353
EMBL:AY084453EMBL:CP002686EnsemblPlants:AT3G19910EnsemblPlants:AT3G19910.1entrez:821529Gene3D:3.30.40.10GeneID:821529
Genevisible:Q9LT17GO:GO:0004842GO:GO:0008270GO:GO:0016567GO:GO:0016874GO:GO:0051865Gramene:AT3G19910.1
hmmpanther:PTHR14155hmmpanther:PTHR14155:SF166HOGENOM:HOG000239779InParanoid:Q9LT17InterPro:IPR001841InterPro:IPR013083iPTMnet:Q9LT17
KEGG:ath:AT3G19910KO:K19045OMA:NDPQDAWPaxDb:Q9LT17Pfam:PF13639Pfam:Q9LT17Pfscan:PS50089
PhylomeDB:Q9LT17PRIDE:Q9LT17PRO:PR:Q9LT17PROSITE:PS50089ProteinModelPortal:Q9LT17Proteomes:UP000006548RefSeq:NP_566651.1
SMART:SM00184SMR:Q9LT17STRING:3702.AT3G19910.1SUPFAM:SSF57850TAIR:AT3G19910UniGene:At.19776UniPathway:UPA00143
UniProt:Q9LT17
Coordinates (TAIR10) chr3:+:6926497..6929324
Molecular Weight (calculated) 37264.50 Da
IEP (calculated) 3.62
GRAVY (calculated) -0.80
Length 340 amino acids
Sequence (TAIR10)
(BLAST)
001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)