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AT3G19850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.526
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G50280.1); Has 817 Blast hits to 802 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 810; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVEGeggNOG:ENOG410YE7GEMBL:AB025631EMBL:AK175315EMBL:AK176753EMBL:AK176817EMBL:AK222235
EMBL:BT012660EMBL:CP002686EnsemblPlants:AT3G19850EnsemblPlants:AT3G19850.1entrez:821522GeneID:821522Genevisible:Q9LT24
GO:GO:0016567Gramene:AT3G19850.1hmmpanther:PTHR32370hmmpanther:PTHR32370:SF15HOGENOM:HOG000241117InParanoid:Q9LT24InterPro:IPR000210
InterPro:IPR011333InterPro:IPR027356KEGG:ath:AT3G19850OMA:NGQQTFFPaxDb:Q9LT24Pfam:PF00651Pfam:PF03000
Pfam:Q9LT24Pfscan:PS50097Pfscan:PS51649PhylomeDB:Q9LT24PRIDE:Q9LT24PRO:PR:Q9LT24PROSITE:PS50097
PROSITE:PS51649ProteinModelPortal:Q9LT24Proteomes:UP000006548RefSeq:NP_188619.2SMART:SM00225STRING:3702.AT3G19850.1SUPFAM:SSF54695
TAIR:AT3G19850UniGene:At.22031UniPathway:UPA00143UniProt:Q9LT24
Coordinates (TAIR10) chr3:-:6898383..6901157
Molecular Weight (calculated) 62994.80 Da
IEP (calculated) 9.09
GRAVY (calculated) -0.36
Length 554 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLCCDLQIN LNNQFTFFVN QDLISEYSGF LRKMIKQSNK KKKNHKNSRI IIEVEDFPGG SDGFDLVLRF CYGGGISIDV SNVSILHCSS VFLEMTEKLC
101: SSNLLLRTEK FLEGMFYWSW NDIVLCLKSC EQVFLHADSY GLVDKLVFGV LAKIPQNSDV SHVFSSSSPS SSASASASSQ SPETAMIRSY SDKRSTSRSF
201: SCRTSNEWWF DDMSILGPKI IEKLINTLGA HDKNNDSLVL TKFLLHYLKT KVPNKSTNKL EYSGLADTAV QGVVFAAKTA FSCRKMFWVL RVLSGFSISK
301: ESRIGLERVI GEMLDQATLD DLLIPAGGKG EKGVYDVDLV IRLLKVFVRI GNTEEGDQNL RMRRIGKLID KYLREISPDQ NLKVSKFLEV AESLPDSARD
401: WFDGLYRAIN IYLESHPKLS SEDRTKLCRC LNYKKLTLDT CKQLAKNPKI PPNIAVQALK SQQLSNETRP HSREDKNKVN KIWNSRKYLE EKPILVCLKG
501: FDMSEKFEDD LMMNLERKQW NNSEKVSKEK KSEVMSRSVR HGHTHSSSSF PRLC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)