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AT3G19820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:9761794 (1998): endoplasmic reticulum
  • PMID:23409184 (2013): endoplasmic reticulum
  • PMID:23409184 (2013): plasma membrane
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23323832 (2013): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cell elongation protein / DWARF1 / DIMINUTO (DIM)
Curator
Summary (TAIR10)
Involved in the conversion of the early brassinosteroid precursor 24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype. DWF1 is a Ca2+-dependent calmodulin-binding protein.
Computational
Description (TAIR10)
DWARF 1 (DWF1); FUNCTIONS IN: calmodulin binding, catalytic activity; INVOLVED IN: response to light stimulus, steroid biosynthetic process, unidimensional cell growth, brassinosteroid biosynthetic process; LOCATED IN: integral to membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), FAD linked oxidase, N-terminal (InterPro:IPR006094); Has 2747 Blast hits to 2744 proteins in 657 species: Archae - 35; Bacteria - 1665; Metazoa - 178; Fungi - 472; Plants - 176; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G19820-MONOMERBioCyc:ARA:GQT-1949-MONOMERBioCyc:ARA:GQT-1950-MONOMERBioCyc:MetaCyc:AT3G19820-MONOMERBioGrid:6851EC:1.3.1.72eggNOG:COG0277
eggNOG:KOG1262EMBL:AB025631EMBL:AB493623EMBL:AK226335EMBL:AY072216EMBL:AY081286EMBL:AY096472
EMBL:BT000367EMBL:CP002686EMBL:L38520EMBL:U12400EnsemblPlants:AT3G19820EnsemblPlants:AT3G19820.1EnsemblPlants:AT3G19820.2
EnsemblPlants:AT3G19820.3entrez:821519Gene3D:3.30.465.10GeneID:821519Genevisible:Q39085GO:GO:0005516GO:GO:0005773
GO:GO:0005774GO:GO:0005783GO:GO:0005886GO:GO:0009808GO:GO:0009826GO:GO:0009834GO:GO:0016020
GO:GO:0016021GO:GO:0016132GO:GO:0016614GO:GO:0050614GO:GO:0050660Gramene:AT3G19820.1Gramene:AT3G19820.2
Gramene:AT3G19820.3gramene_pathway:1.3.-.-gramene_pathway:1.3.1.72gramene_pathway:2.7.7.-gramene_pathway:PWY-2541gramene_pathway:PWY-6663hmmpanther:PTHR10801
hmmpanther:PTHR10801:SF0HOGENOM:HOG000243421InParanoid:Q39085InterPro:IPR006094InterPro:IPR016166InterPro:IPR016169iPTMnet:Q39085
KEGG:ath:AT3G19820KO:K09828MINT:MINT-1577548ncoils:CoilOMA:TYMCTGRPaxDb:Q39085Pfam:PF01565
Pfam:Q39085Pfscan:PS51387PhylomeDB:Q39085PIR:S71189PRIDE:Q39085PRO:PR:Q39085PROSITE:PS51387
ProteinModelPortal:Q39085Proteomes:UP000006548Reactome:R-ATH-6807047Reactome:R-ATH-6807062RefSeq:NP_001189937.1RefSeq:NP_188616.1RefSeq:NP_850616.1
SMR:Q39085STRING:3702.AT3G19820.1SUPFAM:SSF56176SwissPalm:Q39085TAIR:AT3G19820tair10-symbols:CBB1tair10-symbols:DIM
tair10-symbols:DIM1tair10-symbols:DWF1tair10-symbols:EVE1TMHMM:TMhelixUniGene:At.248UniGene:At.71543UniProt:Q39085
Coordinates (TAIR10) chr3:-:6879835..6881616
Molecular Weight (calculated) 65397.80 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.42
Length 561 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDLQTPLVR PKRKKTWVDY FVKFRWIIVI FIVLPFSATF YFLIYLGDMW SESKSFEKRQ KEHDENVKKV IKRLKGRDAS KDGLVCTARK PWIAVGMRNV
101: DYKRARHFEV DLGEFRNILE INKEKMTARV EPLVNMGQIS RATVPMNLSL AVVAELDDLT VGGLINGYGI EGSSHIYGLF ADTVEAYEIV LAGGELVRAT
201: RDNEYSDLYY AIPWSQGTLG LLVAAEIRLI KVKEYMRLTY IPVKGDLQAL AQGYIDSFAP KDGDKSKIPD FVEGMVYNPT EGVMMVGTYA SKEEAKKKGN
301: KINNVGWWFK PWFYQHAQTA LKKGQFVEYI PTREYYHRHT RCLYWEGKLI LPFGDQFWFR YLLGWLMPPK VSLLKATQGE AIRNYYHDMH VIQDMLVPLY
401: KVGDALEWVH REMEVYPIWL CPHKLFKQPI KGQIYPEPGF EYENRQGDTE DAQMYTDVGV YYAPGCVLRG EEFDGSEAVR RMEKWLIENH GFQPQYAVSE
501: LDEKSFWRMF NGELYEECRK KYRAIGTFMS VYYKSKKGRK TEKEVREAEQ AHLETAYAEA D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)