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AT3G19810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF177)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF177); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF177 (InterPro:IPR003772); Has 677 Blast hits to 677 proteins in 297 species: Archae - 0; Bacteria - 566; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKYXeggNOG:ENOG4111K3CEMBL:AB025631EMBL:AK226924EMBL:AY088199EMBL:BT026117EMBL:CP002686
EnsemblPlants:AT3G19810EnsemblPlants:AT3G19810.1entrez:821518GeneID:821518Gramene:AT3G19810.1hmmpanther:PTHR34374HOGENOM:HOG000239635
InterPro:IPR003772KEGG:ath:AT3G19810OMA:KGYGPLGPfam:PF02620PhylomeDB:Q9LT27Proteomes:UP000006548RefSeq:NP_566649.1
STRING:3702.AT3G19810.1TAIR:AT3G19810UniGene:At.19008UniGene:At.66494UniProt:Q9LT27
Coordinates (TAIR10) chr3:-:6877756..6878812
Molecular Weight (calculated) 36052.80 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.52
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLVCSLSCV APLPQTKQSR PSFLKLETCT LSLSSPAGYP NFTTGIRKHI SYLFTEPIKL PRLAKSRILV SQESFTETST IDMDWEDQEE IEDTGSPWEG
101: SVMYRRNASV THVEYCTTLE RLGLGRLSTD VSKKRASAMG LRVTKDVKDY PDGTPVQVSV DVIRKKKKLR LDGIVRTVIT LGCNRCGEST GESIFSNFSL
201: LLTEEPVEEP DVIDLGFTFG NDKEEGEDDD DNDDSWIDWE DKLHFPPEVK EIDISKHIRD LVHLEITITA ICDSACKGMC LKCGANLNKR KCDCGREEKD
301: KGYGPLGNLR EQMQQKEGLR N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)