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AT3G19680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1005)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1005); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT1G50040.1); Has 782 Blast hits to 189 proteins in 38 species: Archae - 0; Bacteria - 22; Metazoa - 12; Fungi - 23; Plants - 137; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JAXHeggNOG:ENOG4111A76EMBL:AK227179EMBL:AK230353EMBL:AP000417EMBL:AY150417EMBL:CP002686
EnsemblPlants:AT3G19680EnsemblPlants:AT3G19680.1entrez:821505GeneID:821505GO:GO:0005886GO:GO:0009536Gramene:AT3G19680.1
hmmpanther:PTHR31317hmmpanther:PTHR31317:SF3InterPro:IPR010410KEGG:ath:AT3G19680OMA:FVMSATVPfam:PF06219PhylomeDB:Q9LJM6
PIR:T52398Proteomes:UP000006548RefSeq:NP_188602.1STRING:3702.AT3G19680.1TAIR:AT3G19680UniGene:At.17613UniGene:At.8144
UniProt:Q9LJM6
Coordinates (TAIR10) chr3:+:6840448..6842107
Molecular Weight (calculated) 51964.80 Da
IEP (calculated) 8.55
GRAVY (calculated) -0.29
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPCSFVRII VGNLAVRFPS SSSSSSSSSG PSVSGINPTA PNCYCKIRFK NFPREIVSVP VMFRTESESE TRCSSSGNVS TVAACFSLSK AQIEASLKKP
101: KFSVLSVEAY SRGNSDGDDG VSGASCGLAT AGEKLLGRFE VSLDLKSAET KSFLAHNGWV ALPSKKTKSK TGSDPELHVS VRVEPDPRFV FQFDGEPECS
201: PQVFQVQGNT KQAVFTCKFG SRNSNSGDRN LLHSSSMMSE ISSTRSCISS MNSEKEQPSK ERKGWSITVH DLSGSPVAMA SMVTPFVPSP GSNRVTRSSP
301: GAWLILRPDG CTWKPWGRLE AWREAGYSDT LGYRFELFQD GIATAVSASS SISLKNGGSF VIDVTGGTST TASTPTTSPQ GSWDLGSGSS AGSRPASRPG
401: SGSGSDFGYL LPQHPSAAAQ NRGFVMSATV EGVGKRSKPE VEVGVTHVTC TEDAAAHVAL AAAVDLSLDA CRLFSHKLRK ELRQQSQLGV V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)