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AT3G19670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pre-mRNA-processing protein 40B
Curator
Summary (TAIR10)
Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries. Ubiquitously expressed and localize to the nucleus.
Computational
Description (TAIR10)
pre-mRNA-processing protein 40B (PRP40B); FUNCTIONS IN: RNA polymerase binding; INVOLVED IN: RNA splicing; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40A (TAIR:AT1G44910.1); Has 12458 Blast hits to 9290 proteins in 504 species: Archae - 82; Bacteria - 460; Metazoa - 6303; Fungi - 1179; Plants - 857; Viruses - 9; Other Eukaryotes - 3568 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5104eggNOG:KOG0152EMBL:AP000417EMBL:CP002686EnsemblPlants:AT3G19670EnsemblPlants:AT3G19670.1entrez:821504
Gene3D:1.10.10.440GeneID:821504Genevisible:F4JCC1GO:GO:0000398GO:GO:0003723GO:GO:0005634GO:GO:0005685
GO:GO:0006351GO:GO:0006355GO:GO:0071004Gramene:AT3G19670.1hmmpanther:PTHR11864hmmpanther:PTHR11864:SF0InParanoid:F4JCC1
InterPro:IPR001202InterPro:IPR002713iPTMnet:F4JCC1KEGG:ath:AT3G19670KO:K12821ncoils:CoilOMA:MHHSHER
PaxDb:F4JCC1Pfam:F4JCC1Pfam:PF00397Pfam:PF01846Pfscan:PS50020Pfscan:PS51676PIR:T52396
PRIDE:F4JCC1PRO:PR:F4JCC1PROSITE:PS01159PROSITE:PS50020PROSITE:PS51676ProteinModelPortal:F4JCC1Proteomes:UP000006548
RefSeq:NP_188601.4scanprosite:PS01159SMART:SM00441SMART:SM00456SMR:F4JCC1STRING:3702.AT3G19670.1SUPFAM:SSF51045
SUPFAM:SSF81698TAIR:AT3G19670tair10-symbols:ATPRP40Btair10-symbols:PRP40BUniGene:At.27544UniProt:F4JCC1
Coordinates (TAIR10) chr3:-:6828242..6836582
Molecular Weight (calculated) 113575.00 Da
IEP (calculated) 6.91
GRAVY (calculated) -1.01
Length 992 amino acids
Sequence (TAIR10)
(BLAST)
001: MANNHQYPGI QPFQHPNASS IDLPRGFAPP MNFQFLPTIQ APQSEQVARL SSQNFQCVGR GGTVLSIGYP PQSYAPQLLQ SMHHSHERPS QLNQVQVQHV
101: PLGPPTLISQ PNVSIASGTS LHQPYVQTPD IGMPGFGGPR ALFSYPSATS YEGSRVPPQV TGPSIHSQAQ QRASIIHTSA ESSIMNPTFE QPKAAFLKPL
201: PSQKALTDWV EHTSADGRKY FFNKRTKKST WEKPVELMTL FERADARTDW KEHSSPDGRK YYYNKITKQS TWTMPEEMKI VREQAEIASV QGPHAEGIID
301: ASEVLTRSDT ASTAAPTGLP SQTSTSEGVE KLTLTSDLKQ PASVPGSSSP VENVDRVQMS ADETSQLCDT SETDGLSVPV TETSAATLVE KDEISVGNSG
401: DSDDMSTKNA NQGSGSGPKE SQKPMVESEK VESQTEEKQI HQESFSFNNK LEAVDVFKSL LKSAKVGSDW TWEQAMREII NDKRYGALRT LGERKQAFNE
501: FLLQTKRAAE EERLARQKKL YEDFKRMLEE CVELTPSTRW SKTVTMFEDD ERFKALEREK DRRNIFEDHV SELKEKGRVK ALEDRKRNII EYKRFLESCN
601: FIKPNSQWRK VQDRLEVDER CSRLEKIDQL EIFQEYLRDL EREEEEKKKI QKEELKKVER KHRDEFHGLL DEHIATGELT AKTIWRDYLM KVKDLPVYSA
701: IASNSSGATP KDLFEDAVED LKKRDHELKS QIKDVLKLRK VNLSAGSTFD EFKVSISEDI GFPLIPDVRL KLVFDDLLER AKEKEEKEAR KQTRQTEKLV
801: DMLRSFKDIT ASSSWEELKH LVEGSEKCST IGDESFRKRC FEDYVSLLKE QSNRIKQNKK VPEDVREEHD KGRDKYGREK DRVRERDSDD HHKKGAAGKY
901: NHDMNEPHGK ERRRSGRDSH NRHRERHTSV KENDTDHFKE SHKAGGGHKK SRHQRGWVSE AEVEGKEKRR RKEEAREHTK EEELEDGECG RY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)