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AT3G19650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cyclin-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cyclin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 5668 Blast hits to 3895 proteins in 309 species: Archae - 0; Bacteria - 250; Metazoa - 3167; Fungi - 631; Plants - 477; Viruses - 7; Other Eukaryotes - 1136 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY3IeggNOG:ENOG410YPC1EMBL:AP000417EMBL:BT020230EMBL:BT020510EMBL:CP002686EnsemblPlants:AT3G19650
EnsemblPlants:AT3G19650.1entrez:821502GeneID:821502Gramene:AT3G19650.1hmmpanther:PTHR36364HOGENOM:HOG000082620KEGG:ath:AT3G19650
OMA:DRFNGNGPhylomeDB:Q9LJN1PIR:T52393Proteomes:UP000006548RefSeq:NP_188599.1STRING:3702.AT3G19650.1TAIR:AT3G19650
UniGene:At.38370UniProt:Q9LJN1
Coordinates (TAIR10) chr3:+:6823543..6825174
Molecular Weight (calculated) 35283.70 Da
IEP (calculated) 10.76
GRAVY (calculated) -1.94
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTRRESRDS DPRRHRSRID REPSPKRSRR DGKPEAERVL SKKDLDVRDG TDTEKNSRQS LRDAPLELDA HGSRKDSEKK HSGHHETTKA APHLSQVPRS
101: RPYSQHDDRR SDGKVDRRPT SVRGSWRSSR DQSNRRAGDD EKSQHRKDED KSSWRHDRFR ESDDTQGALS RKRPAFREKK IAEETGNNTD RTRTEDGKDT
201: NLNNRRQNER NWRSNTHSER HERPAMGRDR VWNRDDERGA GSRQSYQADR DRFNGNGRSG FSGSWTRNEK KWDHDLFDEA NKSPAKATEE EQIAKVEALL
301: AS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)