AT3G19630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.609 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Radical SAM superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT1G60230.1); Has 6931 Blast hits to 6927 proteins in 2338 species: Archae - 5; Bacteria - 5129; Metazoa - 1; Fungi - 1; Plants - 138; Viruses - 3; Other Eukaryotes - 1654 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6818676..6820674 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41181.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.85 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.00 | ||||||||||||||||||||||||||||||||||||||||
| Length | 372 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLKSVFDAS EIKSEFESAG INPKFAIQIW KYVIQNPDCV WDEIPSLPSA AYSLLHSKFK TLTSSLHSLF HSSDGTTSKL LIKLQNGAFV EAVVMRYDTR 101: LGMLGGKPRP GGIRSTLCIS SQVGCKMGCT FCATGTMGFK SNLTSGEIVE QLVHASRIAD IRNIVFMGMG EPLNNYNAVV EAVRVMLNQP FQLSPKRITI 201: STVGIVHAIN KLHNDLPGVS LAVSLHAPVQ EIRCQIMPAA RAFPLQKLMD ALQTFQKNSQ QKIFIEYIML DGVNDQEQHA HLLGELLKTF QVVINLIPFN 301: PIGSTSQFET SSIQGVSRFQ KILRETYKIR TTIRKEMGQD ISGACGQLVV NQPDIKKTPG TVELRDIEDL LL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)