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AT3G19620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-D-xylosidase 4 (TAIR:AT5G64570.1); Has 9087 Blast hits to 7801 proteins in 1160 species: Archae - 63; Bacteria - 5399; Metazoa - 17; Fungi - 1628; Plants - 528; Viruses - 0; Other Eukaryotes - 1452 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G19620-MONOMERCAZy:GH3EC:3.2.1.-eggNOG:COG1472eggNOG:ENOG410IE0IeggNOG:ENOG410JT41EMBL:AP000417
EMBL:CP002686EnsemblPlants:AT3G19620EnsemblPlants:AT3G19620.1entrez:821499Gene3D:3.20.20.300Gene3D:3.40.50.1700GeneID:821499
Genevisible:Q9LJN4GO:GO:0004553GO:GO:0005578GO:GO:0005618GO:GO:0005975Gramene:AT3G19620.1hmmpanther:PTHR30620
hmmpanther:PTHR30620:SF31HOGENOM:HOG000031216InterPro:IPR001764InterPro:IPR002772InterPro:IPR017853InterPro:IPR026891InterPro:IPR026892
KEGG:ath:AT3G19620KO:K15920OMA:DMNMRANPANTHER:PTHR30620PaxDb:Q9LJN4Pfam:PF00933Pfam:PF01915
Pfam:PF14310Pfam:Q9LJN4PhylomeDB:Q9LJN4PIR:T52390PRIDE:Q9LJN4PRINTS:PR00133PRO:PR:Q9LJN4
ProteinModelPortal:Q9LJN4Proteomes:UP000006548RefSeq:NP_188596.1SMART:SM01217SMR:Q9LJN4STRING:3702.AT3G19620.1SUPFAM:0046644
SUPFAM:SSF51445SUPFAM:SSF52279TAIR:AT3G19620UniGene:At.50204UniProt:Q9LJN4
Coordinates (TAIR10) chr3:-:6815613..6818308
Molecular Weight (calculated) 85504.90 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.10
Length 781 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIRRFVRLS LLIIALVSSL CESQKNFACD ISAPATAKYG FCNVSLSYEA RAKDLVSRLS LKEKVQQLVN KATGVPRLGV PPYEWWSEAL HGVSDVGPGV
101: HFNGTVPGAT SFPATILTAA SFNTSLWLKM GEVVSTEARA MHNVGLAGLT YWSPNVNVFR DPRWGRGQET PGEDPLVVSK YAVNYVKGLQ DVHDAGKSRR
201: LKVSSCCKHY TAYDLDNWKG IDRFHFDAKV TKQDLEDTYQ TPFKSCVEEG DVSSVMCSYN RVNGIPTCAD PNLLRGVIRG QWRLDGYIVS DCDSIQVYFN
301: DIHYTKTRED AVALALKAGL NMNCGDFLGK YTENAVKLKK LNGSDVDEAL IYNYIVLMRL GFFDGDPKSL PFGNLGPSDV CSKDHQMLAL EAAKQGIVLL
401: ENRGDLPLPK TTVKKLAVIG PNANATKVMI SNYAGVPCKY TSPIQGLQKY VPEKIVYEPG CKDVKCGDQT LISAAVKAVS EADVTVLVVG LDQTVEAEGL
501: DRVNLTLPGY QEKLVRDVAN AAKKTVVLVI MSAGPIDISF AKNLSTIRAV LWVGYPGEAG GDAIAQVIFG DYNPSGRLPE TWYPQEFADK VAMTDMNMRP
601: NSTSGFPGRS YRFYTGKPIY KFGYGLSYSS FSTFVLSAPS IIHIKTNPIM NLNKTTSVDI STVNCHDLKI RIVIGVKNHG LRSGSHVVLV FWKPPKCSKS
701: LVGGGVPLTQ LVGFERVEVG RSMTEKFTVD FDVCKALSLV DTHGKRKLVT GHHKLVIGSN SDQQIYHHLN VRLAGDSTVA I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)