AT3G19620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-D-xylosidase 4 (TAIR:AT5G64570.1); Has 9087 Blast hits to 7801 proteins in 1160 species: Archae - 63; Bacteria - 5399; Metazoa - 17; Fungi - 1628; Plants - 528; Viruses - 0; Other Eukaryotes - 1452 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6815613..6818308 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85504.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 781 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSIRRFVRLS LLIIALVSSL CESQKNFACD ISAPATAKYG FCNVSLSYEA RAKDLVSRLS LKEKVQQLVN KATGVPRLGV PPYEWWSEAL HGVSDVGPGV 101: HFNGTVPGAT SFPATILTAA SFNTSLWLKM GEVVSTEARA MHNVGLAGLT YWSPNVNVFR DPRWGRGQET PGEDPLVVSK YAVNYVKGLQ DVHDAGKSRR 201: LKVSSCCKHY TAYDLDNWKG IDRFHFDAKV TKQDLEDTYQ TPFKSCVEEG DVSSVMCSYN RVNGIPTCAD PNLLRGVIRG QWRLDGYIVS DCDSIQVYFN 301: DIHYTKTRED AVALALKAGL NMNCGDFLGK YTENAVKLKK LNGSDVDEAL IYNYIVLMRL GFFDGDPKSL PFGNLGPSDV CSKDHQMLAL EAAKQGIVLL 401: ENRGDLPLPK TTVKKLAVIG PNANATKVMI SNYAGVPCKY TSPIQGLQKY VPEKIVYEPG CKDVKCGDQT LISAAVKAVS EADVTVLVVG LDQTVEAEGL 501: DRVNLTLPGY QEKLVRDVAN AAKKTVVLVI MSAGPIDISF AKNLSTIRAV LWVGYPGEAG GDAIAQVIFG DYNPSGRLPE TWYPQEFADK VAMTDMNMRP 601: NSTSGFPGRS YRFYTGKPIY KFGYGLSYSS FSTFVLSAPS IIHIKTNPIM NLNKTTSVDI STVNCHDLKI RIVIGVKNHG LRSGSHVVLV FWKPPKCSKS 701: LVGGGVPLTQ LVGFERVEVG RSMTEKFTVD FDVCKALSLV DTHGKRKLVT GHHKLVIGSN SDQQIYHHLN VRLAGDSTVA I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)