AT3G19570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF566) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SCO3 (snowy cotyledon3), a member of a largely uncharacterized protein family unique to the plant kingdom. The sco3-1 mutation alters chloroplast morphology and development, reduces chlorophyll accumulation, impairs thylakoid formation and photosynthesis in seedlings, and results in photoinhibition under extreme CO(2) concentrations in mature leaves. SCO3 is targeted to the periphery of peroxisomes. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Family of unknown function (DUF566) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT1G49890.1); Has 4891 Blast hits to 1814 proteins in 299 species: Archae - 6; Bacteria - 1296; Metazoa - 1110; Fungi - 663; Plants - 249; Viruses - 59; Other Eukaryotes - 1508 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6797778..6801293 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68439.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.07 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||
| Length | 627 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAAIPQGAA ISNTDSKNPP PRDRQDKPQL TANNGGLQRR PRAAKNVPSR YLSPSPSHST TTTTTTATST STSSSSSVIL RSSKRYPSPL LSRTTNSASN 101: LVYTPSSLPK RSQSVDRRRP SAVSDTRTEM SAATKMLITS TRSLSVSFQG EAFSFPISKK KETATPVSHR KCTPERRRAT PVRDQRENSK PVDQQLWPGA 201: SRRGSSESVV PNSLSRSVDS DSDDGRKLGS GFVGRSMLQH SQSSRVSGDG RLNLGFVGGD GMLEMRDENK ARQSTHPRLA SSVSCDFTAS DTDSVSSGST 301: NGAHECGSGE VSKTRSLPRN GMASTKFWQE TNSRLRRMQD PGSPQCSSPS SRISSISSKF SQSKRFSSDS PLTSSPRGMT SPIRGATRPA SPSKLWATAT 401: SAPARTSSSP SRVRNGVSEQ MNAYNRTLPS ILCFSADIRR GKIGEDRVMD AHLLRLLYNR DLQWRFANAR ADSTLMVQRL SAEKILWNAW VSISELRHSV 501: TLKRIKLLLM RQKLKLASIL KEQMCYLEEW SLLDRNHSNS LSGATEALKA STLRLPVSGK AVVDIQDLKH AVSSAVDVMH AMVSSIFSLT SKVEEMNSVM 601: AEMVNITGKE EVLLEQCQGF LTRHASC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)