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AT3G19520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF626)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF626); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G28500.1); Has 219 Blast hits to 218 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6821EMBL:AP002065EMBL:AY087790EMBL:BT003826
EMBL:BT005127EMBL:CP002686EnsemblPlants:AT3G19520EnsemblPlants:AT3G19520.1
EnsemblPlants:AT3G19520.2entrez:821488GeneID:821488Genevisible:Q9LH42
Gramene:AT3G19520.1Gramene:AT3G19520.2hmmpanther:PTHR31260hmmpanther:PTHR31260:SF28
HOGENOM:HOG000112307IntAct:Q9LH42InterPro:IPR006462iPTMnet:Q9LH42
KEGG:ath:AT3G19520OMA:QSNDWIRPaxDb:Q9LH42Pfam:PF04776
Pfam:Q9LH42PhylomeDB:Q9LH42PRIDE:Q9LH42PRO:PR:Q9LH42
ProteinModelPortal:Q9LH42Proteomes:UP000006548RefSeq:NP_001118662.1RefSeq:NP_566641.1
STRING:3702.AT3G19520.1TAIR:AT3G19520TIGRfam:TIGR01572TIGRFAMs:TIGR01572
UniGene:At.28032UniGene:At.50893UniProt:Q9LH42
Coordinates (TAIR10) chr3:+:6772773..6774209
Molecular Weight (calculated) 35949.80 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.56
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSLSVNDRK DFVDGQMKYW RQIAESDGFD IDDVPVPRGT RAGLWSVDCK HPRFRLRACL PKIYAMVGLH RYNLLRGTNF EHLELLKYNE SMNCVCSYYI
101: TSVAVDLSSQ LQKTFQIRVD EKSFGDLDLT VSVARPNDEE KVTTEKRFIH HFHCEAAADD FYKGALPDWP SVGDLNNQKR FYMVKKCELQ SNDWIRLYLE
201: LAVGVRYQQT SESDLSKLQV LKVAIETKEE DVQPPNRRLK SKSLHVYITF KGLAKAPIGD EIGEHVERKA IVRRVIDERS GHLTLLGGFS NAKNDLNQSS
301: DDEQPFGKRR RI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)