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AT3G19510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Curator
Summary (TAIR10)
Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains.
Computational
Description (TAIR10)
HAT3.1; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of transcription, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: pathogenesis related homeodomain protein A (TAIR:AT4G29940.1); Has 21195 Blast hits to 13195 proteins in 937 species: Archae - 172; Bacteria - 5087; Metazoa - 6772; Fungi - 2621; Plants - 1255; Viruses - 207; Other Eukaryotes - 5081 (source: NCBI BLink).
Protein Annotations
BioGrid:6818eggNOG:ENOG410XQQAeggNOG:KOG0490eggNOG:KOG4299
EMBL:AB025624EMBL:AK117105EMBL:BT005965EMBL:CP002686
EMBL:X69512EnsemblPlants:AT3G19510EnsemblPlants:AT3G19510.1entrez:821485
Gene3D:1.10.10.60Gene3D:3.30.40.10GeneID:821485Genevisible:Q04996
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0008270GO:GO:0043565GO:GO:0045893Gramene:AT3G19510.1
hmmpanther:PTHR12628hmmpanther:PTHR12628:SF13HOGENOM:HOG000112850InParanoid:Q04996
IntAct:Q04996InterPro:IPR001356InterPro:IPR001965InterPro:IPR009057
InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787
iPTMnet:Q04996KEGG:ath:AT3G19510MINT:MINT-145123ncoils:Coil
OMA:GNGEIENPaxDb:Q04996Pfam:PF00046Pfam:PF00628
Pfam:Q04996Pfscan:PS50016Pfscan:PS50071PhylomeDB:Q04996
PIR:S31437PRIDE:Q04996PRO:PR:Q04996PROSITE:PS00027
PROSITE:PS01359PROSITE:PS50016PROSITE:PS50071ProteinModelPortal:Q04996
Proteomes:UP000006548RefSeq:NP_188582.1scanprosite:PS01359SMART:SM00249
SMART:SM00389SMR:Q04996STRING:3702.AT3G19510.1SUPFAM:SSF46689
SUPFAM:SSF57903TAIR:AT3G19510tair10-symbols:HAT3.1UniGene:At.19694
UniProt:Q04996
Coordinates (TAIR10) chr3:-:6763205..6766049
Molecular Weight (calculated) 80465.50 Da
IEP (calculated) 4.43
GRAVY (calculated) -1.16
Length 723 amino acids
Sequence (TAIR10)
(BLAST)
001: MYKAVSKRVT RSSGSGLKQT NVDNGGEISP TVDRVSEQGK SSEAGSHMPT DANGNGHLHH EIMDHGKGNE EQKPTPQTVK KDSNTNTKFS GSHRELVIGL
101: PCRGQFEIHN RSRASTSSKR LGGGGERNVL FASHKRAQRS KEDAGPSSVV ANSTPVGRPK KKNKTMNKGQ VREDDEYTRI KKKLRYFLNR INYEQSLIDA
201: YSLEGWKGSS LEKIRPEKEL ERATKEILRR KLKIRDLFQH LDTLCAEGSL PESLFDTDGE ISSEDIFCAK CGSKDLSVDN DIILCDGFCD RGFHQYCLEP
301: PLRKEDIPPD DEGWLCPGCD CKDDSLDLLN DSLGTKFSVS DSWEKIFPEA AAALVGGGQN LDCDLPSDDS DDEEYDPDCL NDNENDEDGS DDNEESENED
401: GSSDETEFTS ASDEMIESFK EGKDIMKDVM ALPSDDSEDD DYDPDAPTCD DDKESSNSDC TSDTEDLETS FKGDETNQQA EDTPLEDPGR QTSQLQGDAI
501: LESDVGLDDG PAGVSRRRNV ERLDYKKLYD EEYDNVPTSS SDDDDWDKTA RMGKEDSESE DEGDTVPLKQ SSNAEDHTSK KLIRKSKRAD KKDTLEMPQE
601: GPGENGGSGE IEKSSSSACK QTDPKTQRLY ISFQENQYPD KATKESLAKE LQMTVKQVNN WFKHRRWSIN SKPLVSEENV EKLKTGKEGE CETSVAGSSK
701: QTMETESVAE KPTNTGSRKR RRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)