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AT3G19480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-3-phosphoglycerate dehydrogenase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-3-phosphoglycerate dehydrogenase; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction, L-serine biosynthetic process, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT4G34200.1); Has 31099 Blast hits to 31093 proteins in 2807 species: Archae - 469; Bacteria - 19090; Metazoa - 735; Fungi - 1166; Plants - 566; Viruses - 5; Other Eukaryotes - 9068 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G19480-MONOMEREC:1.1.1.95eggNOG:COG0111eggNOG:KOG0068EMBL:AB025624EMBL:AY042858EMBL:CP002686
EnsemblPlants:AT3G19480EnsemblPlants:AT3G19480.1entrez:821482Gene3D:3.30.1330.90Gene3D:3.40.50.720GeneID:821482Genevisible:Q9LT69
GO:GO:0004617GO:GO:0005739GO:GO:0006564GO:GO:0009070GO:GO:0009507GO:GO:0009570GO:GO:0016597
GO:GO:0051287Gramene:AT3G19480.1gramene_pathway:1.1.1.95gramene_pathway:SERSYN-PWYhmmpanther:PTHR10996hmmpanther:PTHR10996:SF150HOGENOM:HOG000136693
InParanoid:Q9LT69InterPro:IPR002912InterPro:IPR006139InterPro:IPR006140InterPro:IPR006236InterPro:IPR015878InterPro:IPR016040
InterPro:IPR029009InterPro:IPR029752InterPro:IPR029753KEGG:00260+1.1.1.95KEGG:00270+3.3.1.1KEGG:00680+1.1.1.95KEGG:ath:AT3G19480
KO:K00058OMA:KISEERMPaxDb:Q9LT69Pfam:PF00389Pfam:PF01842Pfam:PF02826Pfam:Q9LT69
Pfscan:PS51671PhylomeDB:Q9LT69PRIDE:Q9LT69PRO:PR:Q9LT69ProMEX:Q9LT69PROSITE:PS00065PROSITE:PS00670
PROSITE:PS00671PROSITE:PS51671ProteinModelPortal:Q9LT69Proteomes:UP000006548Reactome:R-ATH-977347RefSeq:NP_566637.2scanprosite:PS00065
scanprosite:PS00670scanprosite:PS00671SMART:SM00997SMR:Q9LT69STRING:3702.AT3G19480.1SUPFAM:SSF143548SUPFAM:SSF51735
SUPFAM:SSF52283SUPFAM:SSF55021TAIR:AT3G19480TIGRfam:TIGR01327TIGRFAMs:TIGR01327UniGene:At.46279UniGene:At.68436
UniPathway:UPA00135unipathway:UPA00314UniProt:Q9LT69
Coordinates (TAIR10) chr3:+:6752590..6754650
Molecular Weight (calculated) 62125.80 Da
IEP (calculated) 8.44
GRAVY (calculated) 0.24
Length 588 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSLNLSSI FSSSSRLVTT PSSVFPIRQR RRIILVTSSS SGGGGKPTIL VTEKLGQAGI DLLKKYANVD CSYDLSLEEL CTKISLCDAL IVRSGTKVGR
101: DVFESSRGRL KVVGRAGVGI DNVDLAAATE YGCLVVNAPT ANTVAAAEHG IALLTAMARN IAQADASIKA GKWTRNKYVG VSLVGKTLAV LGFGKVGSEV
201: ARRARGLGMH VITHDPYAPA DRARAIGVEL VSFEVAISTA DFISLHLPLT AATSKMMNDV TFAMMKKGVR IVNVARGGVI DEEALLRALD SGIVAQAALD
301: VFTVEPPVKD NKLVLHESVT ATPHLGASTM EAQEGVSIEV AEAVIGALRG ELAATAVNAP MVPLEVLREL KPYVVLAEKL GRLAVQLVTG GSGVNAVKVT
401: YASSRAPDDL DTRLLRAMVI KGIIEPISSV FINLVNSDYI AKQRGVKISE ERMVLDGSPE NPIEYITVRI ANVESRFASA LSESGEIKVE GRVKQGVPSL
501: TKVGLFGVDV SLEGSVILCR QVDQPGMIGK VASILGDENV NVSFMSVGRI APGKQAVMAI GVDEQPSKET LKKIGDIPAI EEFVFLKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)