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AT3G19460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.943
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Reticulon family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Reticulon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G15280.1); Has 1108 Blast hits to 1108 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 644; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
BioGrid:6813EMBL:AB025624EMBL:AK117258EMBL:AY087614EMBL:BT005221EMBL:CP002686EnsemblPlants:AT3G19460
EnsemblPlants:AT3G19460.1entrez:821480ExpressionAtlas:Q9LT71GeneID:821480Genevisible:Q9LT71GO:GO:0005789GO:GO:0016021
hmmpanther:PTHR10994hmmpanther:PTHR10994:SF77HOGENOM:HOG000237479InParanoid:Q9LT71IntAct:Q9LT71InterPro:IPR003388OMA:MATHHRP
Pfam:PF02453Pfam:Q9LT71Pfscan:PS50845PhylomeDB:Q9LT71PRIDE:Q9LT71PRO:PR:Q9LT71PROSITE:PS50845
ProteinModelPortal:Q9LT71Proteomes:UP000006548RefSeq:NP_566635.1TAIR:AT3G19460TMHMM:TMhelixUniGene:At.38403UniProt:Q9LT71
Coordinates (TAIR10) chr3:+:6747600..6748904
Molecular Weight (calculated) 22421.40 Da
IEP (calculated) 10.02
GRAVY (calculated) 0.37
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)