AT3G19440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pseudouridine synthase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G78910.1); Has 18366 Blast hits to 18356 proteins in 2657 species: Archae - 12; Bacteria - 13665; Metazoa - 270; Fungi - 217; Plants - 245; Viruses - 0; Other Eukaryotes - 3957 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6740778..6743132 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52968.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.95 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 477 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKWRLATAT LRRQLQSSSP TISTFKNPTK ALSAAAHQST RSYSTTQTDD SRGKWLTLPP FSPTIDGTAV GKDLLSDGDS VKSSTDNSKT TALRWILRCR 101: PDLPRTLVQK LFRLRQVRRE MSMSVDGDEL QRSQLKRVAA KESLNVGDRI YLPLSVDNDT PQTPPAKKES FQCSDEERKF VCSLVLYKDP AIIVLNKPHG 201: LAVQGGSGIK TSIDELAASC LKFDKSESPR LVHRLDRDCS GLLVLARTQT AATVLHSIFR EKTTGASAYG VKKNVKSLKR KYMALVIGCP PRQRGQISAP 301: LRKVVVDDGK SERITVNDNG ELVSTQHAIT EYRVIESSPH GYTWLELRPL TGRKHQLRVH CAEVLGTPIV GDYKYGWQAH KAREPFVSSE NNPTKQSSSP 401: FGLDLDGGDV SSKQPHLHLH SKQIDLPNIS QLLEKMQVSS DSDISDLDSL KFDAPLPSHM QLSFNLLKSR VETCDKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)