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AT3G19390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26016527 (2015): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Granulin repeat cysteine protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Granulin repeat cysteine protease family protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT5G43060.1); Has 9061 Blast hits to 8168 proteins in 770 species: Archae - 67; Bacteria - 297; Metazoa - 4335; Fungi - 6; Plants - 1937; Viruses - 140; Other Eukaryotes - 2279 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G19390-MONOMEReggNOG:COG4870eggNOG:KOG1543eggNOG:KOG4296
EMBL:AB025624EMBL:AY062725EMBL:AY093350EMBL:CP002686
EnsemblPlants:AT3G19390EnsemblPlants:AT3G19390.1entrez:821473GeneID:821473
GO:GO:0008234Gramene:AT3G19390.1hmmpanther:PTHR12411hmmpanther:PTHR12411:SF344
HOGENOM:HOG000230773IntAct:Q9LT78InterPro:IPR000118InterPro:IPR000169
InterPro:IPR000668InterPro:IPR013128InterPro:IPR013201InterPro:IPR025660
InterPro:IPR025661KEGG:ath:AT3G19390MEROPS:I29.003OMA:MERTRVP
PANTHER:PTHR12411Pfam:PF00112Pfam:PF00396Pfam:PF08246
PhylomeDB:Q9LT78PRINTS:PR00705PROSITE:PS00139PROSITE:PS00639
PROSITE:PS00640Proteomes:UP000006548RefSeq:NP_566633.1scanprosite:PS00139
scanprosite:PS00639scanprosite:PS00640SMART:SM00277SMART:SM00645
SMART:SM00848SMR:Q9LT78STRING:3702.AT3G19390.1SUPFAM:SSF54001
SUPFAM:SSF57277TAIR:AT3G19390TMHMM:TMhelixUniGene:At.27473
UniProt:Q9LT78
Coordinates (TAIR10) chr3:+:6723024..6724768
Molecular Weight (calculated) 49310.10 Da
IEP (calculated) 5.40
GRAVY (calculated) -0.37
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSIKSITL ALLIFSVLLI SLSLGSVTAT ETTRNEAEAR RMYERWLVEN RKNYNGLGEK ERRFEIFKDN LKFVEEHSSI PNRTYEVGLT RFADLTNDEF
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)