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AT3G19370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF869)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF869); LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT2G23360.1); Has 44099 Blast hits to 25548 proteins in 1425 species: Archae - 637; Bacteria - 4297; Metazoa - 22352; Fungi - 3568; Plants - 2188; Viruses - 105; Other Eukaryotes - 10952 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQQUeggNOG:ENOG4111AZPEMBL:CP002686EnsemblPlants:AT3G19370EnsemblPlants:AT3G19370.1EnsemblPlants:AT3G19370.2EnsemblPlants:AT3G19370.3
entrez:821471GeneID:821471GO:GO:0005886Gramene:AT3G19370.1Gramene:AT3G19370.2Gramene:AT3G19370.3hmmpanther:PTHR31580
hmmpanther:PTHR31580:SF8InterPro:IPR008587KEGG:ath:AT3G19370ncoils:CoilOMA:SECQETIPfam:PF05911Proteomes:UP000006548
RefSeq:NP_001118660.1RefSeq:NP_001118661.1RefSeq:NP_188568.1TAIR:AT3G19370UniGene:At.5706UniProt:F4JB65
Coordinates (TAIR10) chr3:+:6711046..6713494
Molecular Weight (calculated) 81552.80 Da
IEP (calculated) 7.99
GRAVY (calculated) -0.90
Length 704 amino acids
Sequence (TAIR10)
(BLAST)
001: METNQWRSRK KIESAAETLQ VSSRRGRGQA RMVPPVSGVR SERARKSLSE KLETVALNSP KKDARVSLYG EKSVVDEIFL EDEEMGHETG LKNGESSPFC
101: GVSDKLLQRI ELLGRDHEAT RLDNNKFRSI ESMKKRQEES ACDDLVDMKT KIQTLAAENT QLKKSLVAKE ELAVSLQERK FQVESEFEAL MTRLDSTEKE
201: NAFLRYEYTV LEKDLQVKTE ETEHTRRSME LTHKQQLRNV NKIVELEAEC QRLRLLFRKK FPEKSISMRN EGEEKKMEMR RRNANKSDMM MRDEVQSRKL
301: KYDLLMEQIG NVRAENKNLM DIIMKKNIEI KDLSRGQKPL EASSFDIQSE SSVMSPCGSK EMKLLMDDFN EMEKLAIVCT EKDPRVDDEK EGSFDWIQVV
401: LSAITKQERI SKRGVKELLQ DIKIALGCMD ENDNVERKKG EEDPLCITWK SNNESGPMTK DEIKRHLGLT KSDKVEKIES DEKQELRKKL EESVEKIRNL
501: EAEMKTLREN KEKVEAEMET EKSMKEDLDT KLNITRANLN ETQKKLSSLE VEFDYRKSCC EELEGTCIEL QLQLESVETK KPTQRNKNGW DIATASVKLS
601: ECQETITSLR KQLRALSTTE TSSTIKFLHK RSSLRENIAE DDTNRVAQDD DGNRYNALIV YEPVKARGEK MEMVPRKKQG LGFLKKLLFR RKRVSSKKCL
701: ALTM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)